Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g05462 ATGAAGAAGAATGAAGTTATAAAATCCAAACAACAGCAACCTTCAAACTCTAAGAATAATTTTTCTCATACGTTGAAGGTACAAACTTTCTCATGCAAGTTTTGCAAGAAACAATTTTCTTCTTCACATGCTTTAGGTGGACACCAAAACGCTCATACGAGAGAGCGCACACTTGCAAATCATCATCAAGAGATTATGAATGGATTTGGGACCCCTCATTATCCTTTTTCATACTATAATCGCTCTAGTCTTTCTACTCCCCCTTATCTTGGATATGGATCATATGCTAGAGCACTTGAAATTAAGTTGGAGTCCATGTTTCAAAAGCCTAGTAATATATGGACTCCACCTCCTTTTAAATACGGTTCTACTCCTGCATGGACACCAAGGCAAGAGATGGAAAACAATTCTTCTATTGATGAAGTGAAGATCAAGGGTCTTAATGCTAACAATGGATATATGAATGTTGTTGGAGAGTCTTTAACAAGTGTTGTTACAAAGTCAACTGTGGTTGCCACAAGTGCTGATCATCATCGTCGTACTAACAAAGAAGGAGTTTCGGATTTTGAATATGCTGAGCTTGATTTGTCACTTAAACTTTGA 603 0.3715 MKKNEVIKSKQQQPSNSKNNFSHTLKVQTFSCKFCKKQFSSSHALGGHQNAHTRERTLANHHQEIMNGFGTPHYPFSYYNRSSLSTPPYLGYGSYARALEIKLESMFQKPSNIWTPPPFKYGSTPAWTPRQEMENNSSIDEVKIKGLNANNGYMNVVGESLTSVVTKSTVVATSADHHRRTNKEGVSDFEYAELDLSLKL 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g05462 200 PANTHER AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN, PUTATIVE-RELATED 9 182 - -
Tsu02g05462 200 PANTHER ZINC FINGER PROTEIN JAGGED 9 182 IPR045320 GO:0003700
Tsu02g05462 200 SUPERFAMILY beta-beta-alpha zinc fingers 28 58 IPR036236 -
Tsu02g05462 200 ProSitePatterns Zinc finger C2H2 type domain signature. 32 52 IPR013087 -
Tsu02g05462 200 Gene3D Classic Zinc Finger 10 68 - -
Tsu02g05462 200 MobiDBLite consensus disorder prediction 1 21 - -
Tsu02g05462 200 ProSiteProfiles Zinc finger C2H2 type domain profile. 30 57 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g05462 Tsu-Chr2 63037428 63038030 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g05462 20 112 C2H2 Transcription Factor Family AT5G10970 42.708 9.79e-13 63.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tsu02g05462 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g05462 - - cam:101494832 162.925