Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g05459 ATGTGTGTTGAAGACATGTCCAATAATCCTCCTCCTTCCTCTTCTCGTGCCAAAGATTTCTTTCCCTCTCCAGCTCTCTCTCTTAGCCTTgCAGGGATTTTTCGGCATGGGGGGATGGCGGCGGAGGGCGAAGGGGCGAGTACTAGTAACATGGAGGTGGAGGAAGGGGAGGAAGGGAGTACGGTCGGAGGTGATCAACGCGTGGAGGAAATTAGCAGTGAATATTCCGGTCCAACAAGATCCAAATCAGAGGATGAATTTGAaggagatgaagatgaagaaggtgATGGTGATGGAGATAATAAACACAAGAAGAAAAAACGGAAGAAATATCATAGACACACTGCTGAACAAATCAGAATTATGGAAGCGCTTTTCAAAGAGTCACCACATCCTGATGAAAAGCAGAGGCAACAACTTAGCAAGCAATTAGGTCTTGCTCCAAGGCAAGTCAAATTTTGGTTCCAAAATCGTAGAACCCAAATCAAGGCAATACAAGAGAGACATGAAAATTCATTGTTGAAAACTGAAATAGAgaaattaagagagaaaaataagacCCTAAGAGAGACCATAAATAAAGCTTGTTGCCCCAATTGTGGGGTACCTACTACAAACAAAGATGGTGCCATGCCAAGTGAAGAACAACAACTACGTATTGAAAATGCTAAACTCAAAGCTGAGGTAGAGAAGCTAAGAGCAACTTTAGGGAAACAAGCATCAGGGacaatgtcaccttcatgttcTACTAGCCATGACCAAGAGAATATTAAAAGTTCTTTGGATTTTTACACTGGAATTTTTGGTCTTGATGAATCAAGAATAATGGATATAGTAAACCAAGCAATGGATGAGCTTATAAAGATGGCTACAATGGATGAACCATTGTGGCTACGTAGCTTAGAGACTGGTCGTGAAATACTTAATTATGATGAATATATGAAGGAGTTTTTAGTTGAAAATTCAGATAATGGAAGACCAAAGAGATCCATTGAAGCTTCAAGAGATACAGGAGTTGTTTTTGCAGATCTTCCAAGGATTGTCCAATGTTTTCTTGATGCTAATCAATGGAAGGAAATGTTTCCATGTTTAATATCTAAGGCTGCAACAGTTGACATTATATGCAAAGGAGAAAGTTCTAACAAGAATGGTGCTGTCCAACTGATGTTTGCTGAGCTGCAAATGTTAACACCAATGGTTCCTACAAGAGAAGTGTATTTTGTCAGATACTGCAAACAATTGAGTGGTGAAAAATGGGCAATTGTTGATGTGTCCATTGACAAAGTAGAAGACAACATTGATGCATCTCTCGTGAAGTGTAGAAAACGACCATCTGGTTGCATTATTGAGGATAAGTCAAATGGTCATTGCAAAGTAATATGGGTAGAGCACTTGGAGTGCCGAAAGAGTGCAGTTCATTCGATGTATCGCACCATTGTCAACAGTGGCTTAGCTTTTGGGGCAAGGCATTGGATTGCGACTCTTCAACTTCAATGTGAACGTCTAGTTTTCTTCATGGCAACAAATGTTCCCATGAAGGATTCAACTGGTGTTGCCACATTGGCTGGGAGAAAAAGCATTTTGAAGTTAGCACAAAGAATGACATGGAGTTTCTGTCAAGCTATTAGTGCATCAAGCCTCCATACATGGACTAAGGTTACTAGTAAAACTGGAGAAGATATAAGGATTAGTTCTAGAAAGAATTTGAATGATCCTTGTGAACCTCTTGGTTTGATACTTTGTGCAGTTTCTTCTGTATGGTTGCCTATATCTCCtaatgttttatttgatttcttgaGGGATGAAGCTCGTCGTACCGAGTGGGATATCATGTCTAGTGGTGGGACAGTGCAGTCCATTGCAAATTTAGCCAAAGGACAAGACAGAGGGAATGCAGTAACAATCCAAACAATTAAATCTAAAGAAAACAATATGTGGATACTGCAAGATAGCTGCACAAACTCTTATGAATCAATGGTGGTATATGCTCCTGTGGACATTACTGGTATTCAGTCTGTGATGACGGGATGCGATTCGAGCAATTTAGCCATACTTCCCTCAGGATTCTCAATTATTCCTGATGGTCTAGAGTCAAGGCCAATGGTTATAACTTCAAGGCAGCAAGAGAAAAACACAGATGGAGGATCTTTGTTTACAGTAGCATTCCAGATCCTTACCAATTCTTCTCCTACTGCCAAACTAACAATGGAGTCTGTGGACTCTGTCAACTCTCTTGTATCATGTACATTGAAACACATCAGAACAAGTTTAAATTGCGAAGATGGTTAG 2289 0.3888 MCVEDMSNNPPPSSSRAKDFFPSPALSLSLAGIFRHGGMAAEGEGASTSNMEVEEGEEGSTVGGDQRVEEISSEYSGPTRSKSEDEFEGDEDEEGDGDGDNKHKKKKRKKYHRHTAEQIRIMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKAIQERHENSLLKTEIEKLREKNKTLRETINKACCPNCGVPTTNKDGAMPSEEQQLRIENAKLKAEVEKLRATLGKQASGTMSPSCSTSHDQENIKSSLDFYTGIFGLDESRIMDIVNQAMDELIKMATMDEPLWLRSLETGREILNYDEYMKEFLVENSDNGRPKRSIEASRDTGVVFADLPRIVQCFLDANQWKEMFPCLISKAATVDIICKGESSNKNGAVQLMFAELQMLTPMVPTREVYFVRYCKQLSGEKWAIVDVSIDKVEDNIDASLVKCRKRPSGCIIEDKSNGHCKVIWVEHLECRKSAVHSMYRTIVNSGLAFGARHWIATLQLQCERLVFFMATNVPMKDSTGVATLAGRKSILKLAQRMTWSFCQAISASSLHTWTKVTSKTGEDIRISSRKNLNDPCEPLGLILCAVSSVWLPISPNVLFDFLRDEARRTEWDIMSSGGTVQSIANLAKGQDRGNAVTIQTIKSKENNMWILQDSCTNSYESMVVYAPVDITGIQSVMTGCDSSNLAILPSGFSIIPDGLESRPMVITSRQQEKNTDGGSLFTVAFQILTNSSPTAKLTMESVDSVNSLVSCTLKHIRTSLNCEDG 762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g05459 762 CDD homeodomain 115 163 IPR001356 GO:0003677
Tsu02g05459 762 SUPERFAMILY Bet v1-like 530 754 - -
Tsu02g05459 762 SUPERFAMILY Bet v1-like 271 501 - -
Tsu02g05459 762 ProSiteProfiles 'Homeobox' domain profile. 105 165 IPR001356 GO:0003677
Tsu02g05459 762 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN GLABRA 2 20 759 - -
Tsu02g05459 762 CDD START_ArGLABRA2_like 273 500 - -
Tsu02g05459 762 Gene3D - 95 178 - -
Tsu02g05459 762 Coils Coil 215 235 - -
Tsu02g05459 762 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 20 759 IPR042160 -
Tsu02g05459 762 SMART START_1 277 501 IPR002913 GO:0008289
Tsu02g05459 762 SMART HOX_1 107 169 IPR001356 GO:0003677
Tsu02g05459 762 Pfam Homeodomain 108 163 IPR001356 GO:0003677
Tsu02g05459 762 ProSitePatterns 'Homeobox' domain signature. 140 163 IPR017970 GO:0000981|GO:0006355
Tsu02g05459 762 Gene3D - 278 496 IPR023393 -
Tsu02g05459 762 Coils Coil 164 191 - -
Tsu02g05459 762 MobiDBLite consensus disorder prediction 1 22 - -
Tsu02g05459 762 Pfam START domain 279 501 IPR002913 GO:0008289
Tsu02g05459 762 ProSiteProfiles START domain profile. 268 504 IPR002913 GO:0008289
Tsu02g05459 762 SUPERFAMILY Homeodomain-like 97 166 IPR009057 -
Tsu02g05459 762 MobiDBLite consensus disorder prediction 39 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g05459 Tsu-Chr2 63021556 63029006 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g05459 71 761 Homeobox Transcription Factor Family AT1G79840 64.672 0.0 918
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Tsu02g05459 START 1.9e-56 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g05459 K09338 - gmx:100809926 1256.51