Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g05448 ATGATGGCTGGTAACCCTAACTGGTGGAACATGCATCCACCATCTTTGAATATCCCTCCTCAATATATGCTTGGATCTTCTTCAATCCCTTTCAATTCCTTGACTGAAAATTCTGAAGTACCTCCTCAATCATGGAGTCAACTACTTTTTACTGGAGTAcctggagaagaagagagactTGGTTTCAATCATTTTGAGccaaaaaattcagaaaactgGGATGTGCAAATTCTGAATCCATCTTCAAGAGTTCCTATTATGGATGTAATAAAGCATGAAGTTTCTCAAAATGAGAATTTTTATGGCCAACATCATGAGGAGTTTCATGCTAATAATTCTGGATCACTGTGTTCATCTTGGTCACATATGGTGCCAGTTTCTTCTCCAAGTTCTCATGTCACTAGCTTAAGTAGTGATAATAATATGTTGGATTTCACTTATAACAAGATAGATCATAGCAAGAATCAATTACAAGATCAAATATCTGAGTGTAATAGTTCCACTATTAATGGAGTCAATAAGAAGGCTAGGGTTCAACCATCTTCTTCAAGTCAACCACCTCTAAAGGTGAGGAAGGAGAAGCTAGGTGATAGAATAACAGCACTTCACCAGCTAGTTTCTCCATTTGGAAAGACTGACACAGCTTCTGTATTATTAGAAGCCATTGGATACATCAGGTTTCTGCAGAGTCAAATTGAGGCACTAAGCTCTCCTTACTTGGACACTGCAGCATCAAAAAACATGATGAGGAATCAACATTCTGTGCATGTAGAAAGAAATTCTGTATTTCCTGAGGACCCCGGTCAGCTGTTGGATGACAGTGGCCTAAAAAGAAAGGGTGCTCCAATTCCAAACCAGAATGCAGAAGCTAATAAGGCAAAAGACTTAAGGAGTAGAGGGTTGTGCTTGGTTCCAGTGTCATGCACACAACATGTTGGAAGTGAAAATGGAGCTGATTATTGGGCACCAGCATTTGGAAATGGATTTTAA 990 0.3758 MMAGNPNWWNMHPPSLNIPPQYMLGSSSIPFNSLTENSEVPPQSWSQLLFTGVPGEEERLGFNHFEPKNSENWDVQILNPSSRVPIMDVIKHEVSQNENFYGQHHEEFHANNSGSLCSSWSHMVPVSSPSSHVTSLSSDNNMLDFTYNKIDHSKNQLQDQISECNSSTINGVNKKARVQPSSSSQPPLKVRKEKLGDRITALHQLVSPFGKTDTASVLLEAIGYIRFLQSQIEALSSPYLDTAASKNMMRNQHSVHVERNSVFPEDPGQLLDDSGLKRKGAPIPNQNAEANKAKDLRSRGLCLVPVSCTQHVGSENGADYWAPAFGNGF 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g05448 329 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 189 240 IPR036638 GO:0046983
Tsu02g05448 329 Gene3D - 189 255 IPR036638 GO:0046983
Tsu02g05448 329 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 10 316 - -
Tsu02g05448 329 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 179 228 IPR011598 GO:0046983
Tsu02g05448 329 PANTHER OS05G0228400 PROTEIN 10 316 - -
Tsu02g05448 329 CDD bHLH_AtbHLH_like 189 236 IPR045239 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g05448 Tsu-Chr2 62930874 62935326 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g05448 1 270 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G29100 38.218 1.58e-47 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g05448 - - gmx:100802121 430.639
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g05448 02 62930874 62935326 Tsu02g05448 02 62930874 62935326 ECH