Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g05447 ATGTCTACACCATTAGAACATGATTACATAGGTTTGACAGATAATCCTTCTTCAATGGACAAAACATCTTCATCTCTCAACTTCAAGGAGACAGAGCTAAGATTAGGCCTACCTGGTTGTGAATCTCCTGACAGAAAACCAGTTACTAGTACTGATAGAGGAGTCTCTTTCTTTGGTAACAAGAATTTGAACATTAATGTTTGTTCTCCTTTGAACAATCTTGTAGCTAGTGTTGGAGCTAAAAGAGGTTTCTCTAATGCTATTGATGAATCTGTAAAGAAATTACATGAAAAGAATAAACAGGTTGCTGGAACAAATGAGGATGCTAATGCTCATGCTCCTGCTGCAAAGACACAAATTGTGGGATGGCCACCAATTCGATCGTTTcgaaagaacacaatggcgtcaAATTTGACAAAGAGCAATGATGAAGCTGAGGGAAAACCAGGATTTGAATGTCTCTATGTAAAAGTCAGTATGGATGGTGCTCCTTATCTCAGAAAAGTTGATCTCAAAATTTACAACAACTATATGGAACTTTCTTCAGCTCTTGAGAAGATGTTCACATGCTTTACCATTGGTCAATGCAATTCTCCTGGACTTCCTGGAAAAGATGGACTGAGTGAGAGCTCTTTGAGGGATCTTCTTCATGGATCTGAATATGTTCTTACATAtgaagataaagatggagaTTGGATGCTTGTAGGCGATGTTCCTTGGGGGATGTTTGCCGACTCGTGTAGGAGACTAAGGATCATGAAAGGCTCCGAGGCAATTGGGCTAGCTCCAAGAGCCATGGAAAAATCTTAG 810 0.3778 MSTPLEHDYIGLTDNPSSMDKTSSSLNFKETELRLGLPGCESPDRKPVTSTDRGVSFFGNKNLNINVCSPLNNLVASVGAKRGFSNAIDESVKKLHEKNKQVAGTNEDANAHAPAAKTQIVGWPPIRSFRKNTMASNLTKSNDEAEGKPGFECLYVKVSMDGAPYLRKVDLKIYNNYMELSSALEKMFTCFTIGQCNSPGLPGKDGLSESSLRDLLHGSEYVLTYEDKDGDWMLVGDVPWGMFADSCRRLRIMKGSEAIGLAPRAMEKS 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g05447 269 Pfam AUX/IAA family 30 264 IPR033389 -
Tsu02g05447 269 PANTHER AUXIN-RESPONSIVE PROTEIN 92 264 - -
Tsu02g05447 269 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 92 264 IPR003311 GO:0005634|GO:0006355
Tsu02g05447 269 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 17 99 IPR003311 GO:0005634|GO:0006355
Tsu02g05447 269 ProSiteProfiles PB1 domain profile. 153 255 IPR000270 GO:0005515
Tsu02g05447 269 SUPERFAMILY CAD & PB1 domains 154 254 - -
Tsu02g05447 269 Gene3D - 150 266 - -
Tsu02g05447 269 PANTHER AUXIN-RESPONSIVE PROTEIN 17 99 - -
Tsu02g05447 269 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g05447 Tsu-Chr2 62917979 62920202 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g05447 157 263 B3 DNA Binding Superfamily AT4G23980 29.907 1.29e-07 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Tsu02g05447 AUX_IAA 9.2e-91 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g05447 K14484 - gmx:100806699 385.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g05447 02 62917979 62920202 Tsu02g05447 02 62917979 62920202 ECH