Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g05442 ATGGCTGGCATAGCATTTGGACGATTTGACGATTCTTTTAGTGTGAGCTCTATTAAGGCCTATGTAGCTGAGTTCATCTCAACTTTGATCTTTGTTTTTGCTGGTGTTGGTTCAGCCATAGCCTATGCTAAGTTGACATCAGATGCAGCTCTTGAGCCTGCTGGTTTAGTAGCTGTTGCTGTTTGTCATGGTTTTGCTTTGTTTGTTGCTGTTTCTGTCGGAGCTAACATTTCTGGAGGCCATGTCAACCCTGCTGTGACCTTTGGGTTGGCTATTGGAGGACAGATCACAATCCTAACTGGTATCTTCTACTGGATTGCACAGCTTCTTGGTTCCATAGTGGCATGCTTACTTCTCAAGTTTGTCACAGGAGGCTTGACAATTCCTATTCATAGTGTGGCTTCTGGTGTTGGAACTTTTGAAGGAGTTGTAACTGAGATTATCATAACATTTGGATTGGTGTACACAGTGTATGCCACAGCAGCTGATCCCAAGAAAGGGTCATTAGGAACAATTGCACCAATTGCTATTGGTTTCATTGTTGGTGCAAATATCTTAGCTGCAGGACCATTCTCTGGTGGATCAATGAATCCAGCACGTTCATTTGGGCCTGCAGTTGTTAGTGGTGATTACCATGATAATTGGATCTATTGGGTTGGACCCCTTATTGGTGGTGGTATGGCTGGTGTTATCTATGGCTATGTCTTTATGCCCTCAGATCATGTACCTTTGAGTAGTGATTTTTGA 747 0.4324 MAGIAFGRFDDSFSVSSIKAYVAEFISTLIFVFAGVGSAIAYAKLTSDAALEPAGLVAVAVCHGFALFVAVSVGANISGGHVNPAVTFGLAIGGQITILTGIFYWIAQLLGSIVACLLLKFVTGGLTIPIHSVASGVGTFEGVVTEIIITFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGDYHDNWIYWVGPLIGGGMAGVIYGYVFMPSDHVPLSSDF 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g05442 248 CDD MIP 19 235 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu02g05442 248 Pfam Major intrinsic protein 14 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu02g05442 248 ProSitePatterns MIP family signature. 81 89 IPR022357 -
Tsu02g05442 248 PANTHER MIP PROTEIN 1 248 - -
Tsu02g05442 248 PANTHER AQUAPORIN-8 1 248 IPR034294 -
Tsu02g05442 248 SUPERFAMILY Aquaporin-like 13 242 IPR023271 -
Tsu02g05442 248 PRINTS Major intrinsic protein family signature 215 235 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu02g05442 248 PRINTS Major intrinsic protein family signature 19 38 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu02g05442 248 PRINTS Major intrinsic protein family signature 178 200 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu02g05442 248 PRINTS Major intrinsic protein family signature 63 87 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu02g05442 248 PRINTS Major intrinsic protein family signature 145 163 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu02g05442 248 PRINTS Major intrinsic protein family signature 100 119 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu02g05442 248 TIGRFAM MIP: MIP family channel proteins 23 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu02g05442 248 Gene3D Glycerol uptake facilitator protein. 2 246 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g05442 Tsu-Chr2 62894081 62895799 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g05442 1 248 Major Intrinsic Protein MIP AT3G16240 80.800 4.12e-144 401
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g05442 K09873 - rcu:8273814 444.891