Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g05438 atgaaacaaacaaGAAACTGTTACGAAACTTCAAATTTAACAAACACTTCAAAACCTCAAAAAACAGAGACAAAAAAACAGAGCAAGGTGAAGAAAAACAGAGACTCTAGTAACCATCCAGTTTACCATGGTGTTCGAATGCGAAGTTGGGGTAAATGGGTATCTGAAATTCGTGAACCTCGCAAGAAATCACGAATCTGGCTTGGAACTTTTGCTACTCCTGAAATGGCTGCAAGAGCACATGATGTTGCTGCTTTAAGCATAAAGGGTCATTCACCTATTCTTAATTTTCCCGAAATAGCTCACGTGCTTCCTAGACCTGTCACGTTGAATTCACGTGATATACAAGTTGCTGCTTTAGAAGCTGCTTCAATGGTGGAATTTGATTCTCAGATGTTACACTCTGACTCAGGTGAGTCAGGCGAGTCAGGTTCATGTTCATCATTTTCATCAGAGTCTTCTGAGCTGAGTGAGATTGTTGAGCTTCCTAATATAGAAGAGAGTTTTGAGTCGGGTGAGTTGAGAAGTGAGTTTATTTTGATTGACTCGGTGGAAAGTTGGGTGTATCCGTCAGTAGAAAGCCTCTCTGACATGGTGATTGAAGAACAGAGTTTTATGTTATGA 624 0.3974 MKQTRNCYETSNLTNTSKPQKTETKKQSKVKKNRDSSNHPVYHGVRMRSWGKWVSEIREPRKKSRIWLGTFATPEMAARAHDVAALSIKGHSPILNFPEIAHVLPRPVTLNSRDIQVAALEAASMVEFDSQMLHSDSGESGESGSCSSFSSESSELSEIVELPNIEESFESGELRSEFILIDSVESWVYPSVESLSDMVIEEQSFML 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g05438 207 CDD AP2 42 99 IPR001471 GO:0003700|GO:0006355
Tsu02g05438 207 ProSiteProfiles AP2/ERF domain profile. 41 98 IPR001471 GO:0003700|GO:0006355
Tsu02g05438 207 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 3 204 - -
Tsu02g05438 207 MobiDBLite consensus disorder prediction 1 42 - -
Tsu02g05438 207 MobiDBLite consensus disorder prediction 1 21 - -
Tsu02g05438 207 Pfam AP2 domain 40 91 IPR001471 GO:0003700|GO:0006355
Tsu02g05438 207 SUPERFAMILY DNA-binding domain 41 98 IPR016177 GO:0003677
Tsu02g05438 207 PRINTS Ethylene responsive element binding protein signature 42 53 IPR001471 GO:0003700|GO:0006355
Tsu02g05438 207 PRINTS Ethylene responsive element binding protein signature 64 80 IPR001471 GO:0003700|GO:0006355
Tsu02g05438 207 MobiDBLite consensus disorder prediction 22 41 - -
Tsu02g05438 207 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 3 204 - -
Tsu02g05438 207 Gene3D AP2/ERF domain 41 100 IPR036955 GO:0003700|GO:0006355
Tsu02g05438 207 SMART rav1_2 41 104 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g05438 Tsu-Chr2 62865996 62866619 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g05438 9 190 AP2-EREBP Transcription Factor Family AT5G11590 54.688 5.89e-60 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Tsu02g05438 AP2 8.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g05438 K09286 - gmx:100787471 246.514
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g05438 02 62865996 62866619 Tsu02g05438 02 62865996 62866619 ECH