Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g05432 ATGTCTTGTAAAGATGGCAAAGGTGGAAATGGAGGAATAGATAATGGAAAATATGTTCGTTATACACCTGAACAAGTTGAAGCTCTTGAGAGACTTTATCATGATTGTCCTAAACCAAGTAGTATTCGTCGTCAACAACTTATTAGGGAATGTCCTATTCTTTCTCATATTGAACCTAAGCAGATCAAAGTTTGGTTCCAAAATAGAAGATGTAGGGAGAAGCAGAGAAAAGAGGCTTCTCGTTTGCAAGCTGTGAATAGGAAGTTGACTGCTATGAATAAGCTGCTTATGGAGGAGAATGATAGGTTGCAGAAACAAGTTTCTCATTTGGTGTATGAAAATGGCTACTTTCGCCAACATACCCAAAATACTAAACTTGCAACCAAAGACACAAGCTGTGATTCGGCGGTGACTAGTGGTCAACGCAGTTTGACAGCCCAGCATCCCCCAAGGGATGCAAGTCCTGCAGGACTTTTGTCCATTGCAGAAGAAACTTTAGCAGAGTTTCTTTCAAAGGCTACTGGAACTGCTGTTGAGTGGGTCCAAATGCCTGGAATGAAGCCTGGTCCGGATTCTATTGGAATCGTTGCAATTTCTCATGGTTGCCCTGGTGTGGCAGCTAGAGCATGTGGCCTAGTGGGTCTAGAACCTACAAGGGTTGcagaaatcctcaaagatcggCCCTCGTGGTATCGTGATTGCCGAGCTGTGGATATTCTGAACGTGCTCCCCACAGCAAATGGTGGAACCATTGAGCTGCTTTACATGCAGCTATACGCGCCAACCACATTGGCTCCTGCACGGGACTTATGGTTGTTGCGCTACACATCTGTTTTAGAAGATGGAAGCCTAGTGATATGTGAGAGGTCTCTTAAAAATACACAGAATGGTCCAAGCATGCCTCCCGTGCAGCATTTTGTTAGAGCTGAGATGCTGCCAAGTGGGTACCTGATAAGACCCTGTGAAGGAGGTGGTTCCATCATCCACATTGTTGATCATATGGATTTAGAGCCATGGAGTGTTCCTGAAGTACTGCGTCCACTGTATGAATCATCAACAATGCTGGCTCAGAAGACAACAATGGTGGCCCTACGTCACTTGAGGCAGATTTCACATGAAGTTTCTCAGTCTAATGTCACTGGGTGGGGTAGACGACCGGCAGCACTTCGAGCACTTGGTCAAAGACTGAGCCGGGGTTTCAATGAGGCACTCAATGGGTTTAGTGATGAGGGATGGTCAATGATTGGCAATGATGGTGTTGACGATGTTACAATTTTAGTGAATTCATCACCTGACAAATTAATGGGTCTGAATCTATCATTTTCCAATGGATTTCCATCTGTCAGTAATGCAGTCTTATGTGCTAAAGCTTCAATGCTATTACAAAATGTGCCTCCAGCTATTCTACTAAGGTTTCTACGGGAGCATAGATCAGAGTGGGTGGACAACAACATGGATGCTTACTCAGCTGCTGCTATCAAAGTTGGTCCTTGTAGTTTCTCAGGATCTCGGGTTGGAAATTACGGGGGCCAAGTAATCCTTCCTCTAGCCCACACTATTGAGCACGAGGAGTTTCTGGAAGTCATTAAATTGGAAGGAATTGCTCATTCTCCCGAAGACACAATAATGCCTAGAGATGTGTTTCTTTTACAACTCTGCAGTGGAATGGATGAGAACGCTGTTGGTACCTGTGCTGAGCTTATATTTGCTCCAATTGATGCATCTTTTGCTGATGATGCCCCCCTTCTGCCTTCTGGATTTCGCATTATTCCTCTTGATTCGGGAAAGGAAGTGGCAAACCCAAATCGCACCCTTGACCTGGCATCTGCCCTTGATATTGGCCCCGCTGGAAACAAATCTTCAAATGATAGTTCTGGAAATTCTGGCTGTATGAGATCAGTGATGACAATAGCATTTGAATTTGCCTTTGAAAGTCATATGCAAGACCATGTAGCATCTATGGCACGGCAATATGTTCGTAGCATTATATCGTCTGTCCAAAGGGTAGCATTGGCACTTTCACCTTCTAATTTGAGTTCACAAGGTGGGCTCAGGTCACCACGTGGTACTCCTGAAGCTCAAACACTTGCTCGTTGGATCTGTAACAGTTATAGgtgCTTCTTGGGTGCTGAGCTACTTAAATCTAATAATGAGGGGAACGAATCTTTACTCAAGTCCTTGTGGCATCACTCTGATGCAATACTGTGCTGCACTTTAAAGGCGACTCCCGTGTTCACTTTCGCAAACCAGGCAGGGCTTGACATGCTGGAGACTACCTTAGTTGCTCTACAGGATATAGCATTGgagaaaatatttgatgacCATGGCCGAAAGGTTCTGTGCTCGGAGTTTCCTCAAATTATACAACAGGGTTTTGCATGCCTTCAAGGTGGTCTTTGTCTCTCAAGCATGGGGAGACCTATTTCATATGAAAGAGTAGTGGCTTGGAAGGTGCTGAATGAAGAAGAGAATGCTCATTGTATTAGCTTTATGTTTGTGAACTGgtcttttgtttga 2517 0.4366 MSCKDGKGGNGGIDNGKYVRYTPEQVEALERLYHDCPKPSSIRRQQLIRECPILSHIEPKQIKVWFQNRRCREKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSHLVYENGYFRQHTQNTKLATKDTSCDSAVTSGQRSLTAQHPPRDASPAGLLSIAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCPGVAARACGLVGLEPTRVAEILKDRPSWYRDCRAVDILNVLPTANGGTIELLYMQLYAPTTLAPARDLWLLRYTSVLEDGSLVICERSLKNTQNGPSMPPVQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTMLAQKTTMVALRHLRQISHEVSQSNVTGWGRRPAALRALGQRLSRGFNEALNGFSDEGWSMIGNDGVDDVTILVNSSPDKLMGLNLSFSNGFPSVSNAVLCAKASMLLQNVPPAILLRFLREHRSEWVDNNMDAYSAAAIKVGPCSFSGSRVGNYGGQVILPLAHTIEHEEFLEVIKLEGIAHSPEDTIMPRDVFLLQLCSGMDENAVGTCAELIFAPIDASFADDAPLLPSGFRIIPLDSGKEVANPNRTLDLASALDIGPAGNKSSNDSSGNSGCMRSVMTIAFEFAFESHMQDHVASMARQYVRSIISSVQRVALALSPSNLSSQGGLRSPRGTPEAQTLARWICNSYRCFLGAELLKSNNEGNESLLKSLWHHSDAILCCTLKATPVFTFANQAGLDMLETTLVALQDIALEKIFDDHGRKVLCSEFPQIIQQGFACLQGGLCLSSMGRPISYERVVAWKVLNEEENAHCISFMFVNWSFV 838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g05432 838 Gene3D - 195 379 IPR023393 -
Tsu02g05432 838 Pfam START domain 161 369 IPR002913 GO:0008289
Tsu02g05432 838 SMART START_1 160 370 IPR002913 GO:0008289
Tsu02g05432 838 Pfam MEKHLA domain 695 837 IPR013978 -
Tsu02g05432 838 PANTHER CLASS III HD-ZIP PROTEIN CNA1 1 838 - -
Tsu02g05432 838 ProSiteProfiles 'Homeobox' domain profile. 12 76 IPR001356 GO:0003677
Tsu02g05432 838 MobiDBLite consensus disorder prediction 127 153 - -
Tsu02g05432 838 MobiDBLite consensus disorder prediction 127 148 - -
Tsu02g05432 838 Pfam Homeodomain 17 75 IPR001356 GO:0003677
Tsu02g05432 838 ProSiteProfiles START domain profile. 151 352 IPR002913 GO:0008289
Tsu02g05432 838 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 1 838 IPR044830 GO:0003700
Tsu02g05432 838 Gene3D - 10 83 - -
Tsu02g05432 838 CDD bZIP 69 108 - -
Tsu02g05432 838 SUPERFAMILY Homeodomain-like 17 80 IPR009057 -
Tsu02g05432 838 CDD START_ArGLABRA2_like 155 370 - -
Tsu02g05432 838 CDD homeodomain 17 77 IPR001356 GO:0003677
Tsu02g05432 838 SMART HOX_1 14 80 IPR001356 GO:0003677
Tsu02g05432 838 SUPERFAMILY Bet v1-like 160 369 - -
Tsu02g05432 838 Coils Coil 72 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g05432 Tsu-Chr2 62827551 62834944 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g05432 1 790 Homeobox Transcription Factor Family AT1G52150 84.722 0.0 1397
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Tsu02g05432 START 2.1e-52 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g05432 K09338 - gmx:100800165 1552.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g05432 02 62827551 62834944 Tsu02g05432 02 62827551 62834944 ECH
Tsu02g05432 02 62827551 62834944 Tsu08g00368 08 3587121 3595506 PCT