Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g05420 ATGACTCGGCGGTGCTCTCACTGCAGCAATAACGGCCATAATTCACGGACATGTCCGTCTAGAGGCAGCGGTGGAGGGGTTAAGCTTTTCGGAGTTAGATTAACCGATGGATCAATCATTAAAAAAAGCGCCAGTATGGGAAATCTTAACCTCGCTGCACTTCACCATTGTTCTTCTTCTCTTAATCCTGGTTCATCGATTAATCCCGGTTCACCTTTTTCCGACCCGCCTCATGACCCGGACGGTTATTTGTCTGATGATCCGGCTCATGCTTCTACCTTCGTCTCCCGTCGCGGCGAAAGAAAAAAAGGTGTTCCATGGACTGAAGAAGAACATCGTTTGTTCTTGGTTGGTCTCCATAAGCTAGGCAAAGGAGACTGGCGTGGGATAGCACGTAATTTTGTTGTGTCAAGGACCCCTACTCAAGTAGCAAGTCATGCACAGAAGTACTTTATCCGGCAGAGTAATGCTACTAGGAGAAAGAGGCGTTCCAGCCTTTTTGACATGGCTCCAGATATGTGTCCTGATTCAACTTTGATGCCAGAAGAACAAGTACTACTTCCACCTTCTGAGAACTCACAACCTTGCAATGGAAAATCACAACCATCACTAAATCTCTCTCTCAAGTCAGAATATGAACCGATGGAAACTACATCTGGAGAAAATACAGAAGAGGGCAATGAAACTACATTGGGATCAAAGGGATTGACACCAATGACTCATGGATTCTTCCCATCTTATGTACCTGTCCCATTTTCAATATGGCCATCAATTGGAGCTCCATTTGAAGACGTCAACGGAGGAGAGACATCTCATCATAGTCATCATCAGGTTCTCAAGCCGATACCAGTCATTCCAAAGGAACCTGTCAATGTTGATGAACTTGTGGGATTGTCTCATCTGAGCATTGGGGAAGCACAGGTACATGACAGAGAGCCTTCTCCACTTTCCTTGAAGTTGTTAGGAGAGCCCTCAAGGCAATCAGCATTCCATGCAAATGCTCCAGTTGGTGGTTCTGATCTAAACAGTGGCAAAAACAGTGCCATTCAAGCGGTTTGA 1059 0.4561 MTRRCSHCSNNGHNSRTCPSRGSGGGVKLFGVRLTDGSIIKKSASMGNLNLAALHHCSSSLNPGSSINPGSPFSDPPHDPDGYLSDDPAHASTFVSRRGERKKGVPWTEEEHRLFLVGLHKLGKGDWRGIARNFVVSRTPTQVASHAQKYFIRQSNATRRKRRSSLFDMAPDMCPDSTLMPEEQVLLPPSENSQPCNGKSQPSLNLSLKSEYEPMETTSGENTEEGNETTLGSKGLTPMTHGFFPSYVPVPFSIWPSIGAPFEDVNGGETSHHSHHQVLKPIPVIPKEPVNVDELVGLSHLSIGEAQVHDREPSPLSLKLLGEPSRQSAFHANAPVGGSDLNSGKNSAIQAV 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g05420 352 MobiDBLite consensus disorder prediction 332 352 - -
Tsu02g05420 352 Gene3D - 105 156 - -
Tsu02g05420 352 PANTHER TRANSCRIPTION FACTOR KUA1 1 346 - -
Tsu02g05420 352 Pfam Myb-like DNA-binding domain 106 151 IPR001005 -
Tsu02g05420 352 SUPERFAMILY Homeodomain-like 101 156 IPR009057 -
Tsu02g05420 352 MobiDBLite consensus disorder prediction 188 235 - -
Tsu02g05420 352 PANTHER OS01G0187900 PROTEIN 1 346 - -
Tsu02g05420 352 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 102 154 IPR006447 GO:0003677
Tsu02g05420 352 ProSiteProfiles Myb-like domain profile. 99 151 IPR001005 -
Tsu02g05420 352 CDD SANT 106 151 IPR001005 -
Tsu02g05420 352 ProSiteProfiles SANT domain profile. 107 155 IPR017884 -
Tsu02g05420 352 MobiDBLite consensus disorder prediction 1 21 - -
Tsu02g05420 352 SMART sant 103 153 IPR001005 -
Tsu02g05420 352 MobiDBLite consensus disorder prediction 1 22 - -
Tsu02g05420 352 MobiDBLite consensus disorder prediction 63 105 - -
Tsu02g05420 352 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 99 155 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g05420 Tsu-Chr2 62699932 62703306 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Tsu02g05420 Myb_DNA-binding 6.1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g05420 - - gmx:778036 556.599
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g05420 02 62699932 62703306 Tsu02g05420 02 62699932 62703306 ECH