Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g05413 ATGAATGAAATGACAAGAAATGAAAGAGAATCTTCAGAAGAAAGAAAGCTAGAGCTAAGACTTGCTCCACCTGGTGTTGAAAACTGGTTTAAAACCAACAACAAACAAAgagattatgattatgattatgagtCTAAACTCTCTCTTAGTACTACTAATTATTTCTCAAACACAAACAATACTAGTTTTCTTCATTTCCCATCAAACAAACCTATTGTGAGAGGTaaagaatcatcatcatcacaaaccTGTTGTCCTAAATCAGTAGAGTTACAGAATGGTGATAACAAAGTTACAGCTGTTTCCAACACTTCTCAGAAAAGAACTGCTCCTGGAGCAGTAGTGGGATGGCCACCAATTCGTTCATTCAGAAAGAATCTTGCAACAAGCAGCAATTCTAAGGCATCACAACCTGAGTCACATACTCAACAACATAACAAGGTTGCTGGTAAAAAACCAATTGATAACAACTATGGTAAAGGTTTGTTTGTTAAGATTAATATGGATGGTGTTCCAATTGGTAGAAAAGTTGATCTTAATGCTTATGATAGCTATCAAAATCTTTCTTCAGCTGTGGATGAACTCTTTAGAGGACTCCTTAAAGCTCAAAGAGATTCCTCTGGTTGTGGAGGTAACAaggaagaggaagagaaagTGATTAGTGGATTATTGGATGGAAGTGGAGAGTATACTCTTGTATATGAGGATAATGAAGGAGACAGGATGCTTGTTGGTGATGTCCCATGGCATATGTTTGTATCAACAGTGAAGAGGCTTCGAGTGTTGAAGAGTACAGAGCTTTCTGCTTTTACACttGGCACTAGGCAAGACAAGGTTCCTACTTGA 846 0.3487 MNEMTRNERESSEERKLELRLAPPGVENWFKTNNKQRDYDYDYESKLSLSTTNYFSNTNNTSFLHFPSNKPIVRGKESSSSQTCCPKSVELQNGDNKVTAVSNTSQKRTAPGAVVGWPPIRSFRKNLATSSNSKASQPESHTQQHNKVAGKKPIDNNYGKGLFVKINMDGVPIGRKVDLNAYDSYQNLSSAVDELFRGLLKAQRDSSGCGGNKEEEEKVISGLLDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVKRLRVLKSTELSAFTLGTRQDKVPT 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g05413 281 MobiDBLite consensus disorder prediction 127 150 - -
Tsu02g05413 281 Gene3D - 156 275 - -
Tsu02g05413 281 Pfam AUX/IAA family 17 269 IPR033389 -
Tsu02g05413 281 ProSiteProfiles PB1 domain profile. 161 264 IPR000270 GO:0005515
Tsu02g05413 281 PANTHER AUXIN-RESPONSIVE PROTEIN IAA26 6 277 - -
Tsu02g05413 281 MobiDBLite consensus disorder prediction 127 154 - -
Tsu02g05413 281 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 6 277 IPR003311 GO:0005634|GO:0006355
Tsu02g05413 281 SUPERFAMILY CAD & PB1 domains 152 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g05413 Tsu-Chr2 62634972 62639332 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g05413 165 273 B3 DNA Binding Superfamily AT4G23980 34.862 2.17e-14 71.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Tsu02g05413 AUX_IAA 3.8e-71 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g05413 K14484 - gmx:100799244 328.176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g00387 08 3779772 3782937 Tsu02g05413 02 62634972 62639332 ECH
Tsu02g05413 02 62634972 62639332 Tsu02g05413 02 62634972 62639332 ECH
Tsu02g05413 02 62634972 62639332 Tsu08g00387 08 3779772 3782937 PCT