Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g05399 ATGGATAGTCTTAGTTGGAATGATGACTCACAACTTGTTGCCAACATACCAATCTTGTGGAACACTCAACCACAAGATCTTGAAAGAGACTACTCAATGTCCAATCCAagttcaaatattttcaattatCAAATTCAAGATATGCAGAAGATTCAATCAGGAGCTGAAACCAATTGGGAAGAAACTTTAATATTCCAATCATACCCTTCACTTTCAGTCAATATCAACACACCTAACAATTATGTGCCAGATTTCAACATGTCCCATCAACAAAACAGCAAGAGTACTATTACTGCTACATGCTCTCTTGAATCATCACTTGATTGTTTACTTTCAGCAACTACTAATAGTAATACTGATACTAATTCTGTTCAAGATGATGGAATTTCCATGATTTTTTCTGACTGCAAAAACAGAAACTCATGGAACTTCAATGCAGTTTCATCTGTTGAATATGAGAGTACTAATGCATCCATTAATGCTAGAAACAAAGACATGCAGTATCCATTCAAGGAAATAGAGGAAAAATTATCTCAAATTtcctctgatcaaggtaaaatCATTGATTCTAATTCCAAGGTTCATTCCACAAAAAGGACTAAGATTGATCAATATGATCCTTATAACTTCAGTATTACTCAGAATTCTTCTGCTACTGAATTTGGTTTCAAGCTTATCTCAGAGAAACCACCAAAGTCAAAGAAACCAAGATGGGATAATAAGTGTCATGGttcatcaaatatcaatttCCAGCAACCAAATTCATCAGTGTCATTGTCAAACTCATCCATTCATGAAGAGCCTGATCCTGAGGCTATAGCACAAATGAAGGAAATGATATATAGAGCTGCAGCTTTTAGGCCAGTGATGAATTTGGGTTTGGAAGTGATGGAAAAGCCGAAAAGGAAGAATGTTAAGATATCAAATGATCCACAAACTGTGGCTGCAAGACAAAGAAGGGAAAGAATAAGTGAAAGGATTAGAGTTTTGCAGAAGATTGTTCCTGGTGGAACCAAGATGGACACTGCATCAATGCTTGATGAAGCTGCTAATTACCTCAAGTTTCTTAGGTCACAAGTTAAAGCACTAGAGAATCTAGGAAACAAGATTGATACAATGAAGAATTGTCCTTCTACAAACATAGCCTTCTCTTTCAACCCTTCATCAATTCCCATGCAAAGTACTCATTTTCCCATCCAAAACCCTAATGACAACATCCAATATTCTCAGGGTTGA 1236 0.3487 MDSLSWNDDSQLVANIPILWNTQPQDLERDYSMSNPSSNIFNYQIQDMQKIQSGAETNWEETLIFQSYPSLSVNINTPNNYVPDFNMSHQQNSKSTITATCSLESSLDCLLSATTNSNTDTNSVQDDGISMIFSDCKNRNSWNFNAVSSVEYESTNASINARNKDMQYPFKEIEEKLSQISSDQGKIIDSNSKVHSTKRTKIDQYDPYNFSITQNSSATEFGFKLISEKPPKSKKPRWDNKCHGSSNINFQQPNSSVSLSNSSIHEEPDPEAIAQMKEMIYRAAAFRPVMNLGLEVMEKPKRKNVKISNDPQTVAARQRRERISERIRVLQKIVPGGTKMDTASMLDEAANYLKFLRSQVKALENLGNKIDTMKNCPSTNIAFSFNPSSIPMQSTHFPIQNPNDNIQYSQG 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g05399 411 Pfam Helix-loop-helix DNA-binding domain 317 356 IPR011598 GO:0046983
Tsu02g05399 411 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 313 366 IPR036638 GO:0046983
Tsu02g05399 411 Gene3D - 312 376 IPR036638 GO:0046983
Tsu02g05399 411 PANTHER TRANSCRIPTION FACTOR BHLH87 1 405 - -
Tsu02g05399 411 MobiDBLite consensus disorder prediction 244 265 - -
Tsu02g05399 411 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 1 405 IPR045843 GO:0003700|GO:0006355
Tsu02g05399 411 SMART finulus 313 362 IPR011598 GO:0046983
Tsu02g05399 411 Coils Coil 346 366 - -
Tsu02g05399 411 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 307 356 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g05399 Tsu-Chr2 62535705 62538097 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g05399 31 403 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 48.042 2.98e-90 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tsu02g05399 HLH 5.3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g05399 - - gmx:100778004 441.81