Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g05384 ATGGGATCCGAAGCAGAAACTCTTGAAAACCTACCCAAAAGACAAAAATGCTCGGCATGCTATAAGCAATATAAGAAGAAAGAACATCTTATTGAGCACATGAAAACCTCTTACCACTCTGTCCATGAGCCTAGATGTATGGTCTGTAAGAAGCACTGCAAAGCTTTTGAATCTTTGAGGGAGCACCTCATCGGACCTTTGGCTAAAGGAGTTTGTTCAGCTATTTTCTCTAAATGGGGTTGTCAACTTTGTCTGACACTATTTGATAGTCCCGCTTCTCTCGATGACCATGGCGAAACTTGTCGCCTATCTGCCCCTGCTCCTATGGGCACAAGTGAAGTTCCCTTTGTAGACTCCCATATTGATATTCTGGATTCTTCTGATGAAAATGATGCTGACTGGTGCCCTAGAGCAATTGCAATGGACTGTGAAATGGTTGGGGGTGGAAGTGATGGATCGCTAGAACTTTGTGGTAGAGTATGCTTGGTTGATGAAGATGAGAACTTAATCTTTCACACATATGTAAAACCTCAAATCCCTGTTACTAATTATAGGTATGATATAACTGGGTTGACAGAAGAGCGTCTTCGAGATGGTATGCCACTTAAGGAAGTCCGGGAAAAGGTATTACAGATTTTATACAATGGAGAATCCATTGGAAAAGCTAGATTGGATGGTGGCAAGGCCAGGCTTCTTGTAGGGCATGATTTGGCCCATGATTTTGATTGTTTGGGAATGGATTATCCCTGTCACATGATCAGAGACACCGCAAAGTACCGTCCACTGGCGAAGACAAACTTAGCCAGTCATTCGCTTAAGTATCTTACCAGAACATATCTTGGTTATGATATCCAAACCGGCGTTCACGACCCATACGAAGATTGTGTTTCTGTGATGAGACTGTACAAGAGAATACGAGGTCAGAGTCATGAGGATGAAGGCTACGGAAAGTTAATTCCGAGTGACAGCATTGTTGGCATGTGCGACAGTTGGAGATCCAAGGAGCTTGACAACCTCACGCCAGATGAACTTTATGCCATCTCACGACCGAACTATAGGTGCTGGTGTTTGGATTTGAAGCCAAAATCTGTGGAAGCTTGA 1101 0.4351 MGSEAETLENLPKRQKCSACYKQYKKKEHLIEHMKTSYHSVHEPRCMVCKKHCKAFESLREHLIGPLAKGVCSAIFSKWGCQLCLTLFDSPASLDDHGETCRLSAPAPMGTSEVPFVDSHIDILDSSDENDADWCPRAIAMDCEMVGGGSDGSLELCGRVCLVDEDENLIFHTYVKPQIPVTNYRYDITGLTEERLRDGMPLKEVREKVLQILYNGESIGKARLDGGKARLLVGHDLAHDFDCLGMDYPCHMIRDTAKYRPLAKTNLASHSLKYLTRTYLGYDIQTGVHDPYEDCVSVMRLYKRIRGQSHEDEGYGKLIPSDSIVGMCDSWRSKELDNLTPDELYAISRPNYRCWCLDLKPKSVEA 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g05384 366 ProSitePatterns Zinc finger C2H2 type domain signature. 17 39 IPR013087 -
Tsu02g05384 366 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 13 362 - -
Tsu02g05384 366 SMART exoiiiendus 137 311 IPR013520 -
Tsu02g05384 366 Gene3D - 136 315 IPR036397 GO:0003676
Tsu02g05384 366 Pfam Exonuclease 139 302 IPR013520 -
Tsu02g05384 366 CDD REX4_like 139 303 IPR037431 GO:0006364|GO:0008408
Tsu02g05384 366 ProSiteProfiles Zinc finger C2H2 type domain profile. 15 44 IPR013087 -
Tsu02g05384 366 SUPERFAMILY Ribonuclease H-like 138 305 IPR012337 -
Tsu02g05384 366 PANTHER EXONUCLEASE FAMILY PROTEIN 13 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g05384 Tsu-Chr2 62404659 62409970 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g05384 3 358 C2H2 Transcription Factor Family AT3G27970 53.056 3.23e-134 385
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g05384 K18327 - gmx:100805841 576.244