Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g05382 ATGGACAAAAAGCTTGAGCTTATCCATGGAACAATTGAAGCTACCATCTTTAATGCAACTCCTTACTCCCCTTCATTTCCCTTCAATtgtttatttataaatggAAAGCCTGCTTATGTAACAATCAAGATAGACAACAAGAAAGTGGCAAAAACAACACCAGAAAGTGAACGTGTTTGGAACCAAACATTTCAGATTCATTGTGCTCATCAAGCTGATTCAGTTATCACTATTACACTAAAAACATCATGTTCCATATTAGGAAAATTCCACATCCAAGCACAACAGTTGAAGGAAGAAAGTTTGATCAATGGATTCTTCCCTCTCCTTATGGAAAATGGTAAACCAAATCAAGAACTAAAATTAAGGTTTATATTATGGTTCAAACCAGCAAATTTGGAACCTAGTTGGACAAAGTTACTAAGTAGTGAGGAGTTTCAAGGGCTAAGGGATGCTACATTCCCACAAAGGTCTAATTGTCATGTTAAGCTCTATCATGATGCTCATCATTCTCCTAGTTTTCAACCTCCTTTTGATAATTGTGGAATTCCAACAAAGCTATGGGAAGATGTTTATAAAGCTATTGAGGGTGCAAAATATTTAGTATATATTGCAGGCTGGTCCTTCAATCCTAAGATGGTTCTGGTTAGAGATCCTCAAACAGAAATCCCACATGCTAGAGAAATAAAGTTGGGTGAGTTATTGAAGAAGAAAGCAGAAGAAGGAGTTGCTGTGAGGATTATGATTTGGGATGATGAAACATCATTGCCATTTATCAAGAACAAAGGTGTGATGAACACACATGATGAGGATGCTTTTGCTTACTTTAAACACACAAAAGTAGTATGCAGAAAGTGTCCTAGATTACATAACAAATTCCCAACAATCTTTGCTCATCATCAGAAAACCATAACTGTGGATACCAAAGCTCCTAACTCTGTCAATGACAGAGAAATTATGAGCTTTTTGGGCGGTGTAGATTTATGCGACGGTCGATATGATACCGAGAAACATTCATTGTTTCAAACACTTGATATGGAATCACATTACCATGATTTCTACCAGACAAACATTTCAGGAGCTAGCCTCAACAAAGGAGGTCCAAGAGAGCCTTGGCACGATGCTCATTCTTGTATTACCGGCGAGGCTGCTTGGGATGTATTAACCAACTTTGAACAAAGATGGACAAAGCAATGTGATTCGTCTCTTCTAGTGCCTGCAAACACTTTACAAAATCTCATTCCTATTTCCTCAACAAGCACTTCCTTAGAAAGGAATTGGAATGTACAAGTATATCGGTCGATCGACCATGTCTCAGCTAGCCAACTGTTTAGAAAGCTAACAGTTGAGAGTAGCATTCATGAAGCATATGTCGAAGCAATTAGGCGTGCTGATAAGTTTGTGTACATTGAAAACCAATATTTCATTGGAGGATGCCATTTGTGGCAGAAAGATAGAAACAGTGGCTGCAGAAATTTGATTCCTATTGAGATTGCACTCAAGGTTGTCAACAAGATTAAAGCAAGAGAAAGATTTGCAGTGTATATAGTCATACCAATGTGGCCAGAAGGAGTGCCTGAAAGTGAACCAGTTCAAGATATACTGCATTGGACAAGAGAAACAATGACAATGATGTATAAGTTGATTGGAGAAGCAATTATAGAAAGTGGTGAGCCAGGACATCCAAGAGATTACTTGAATTTCTTTTGCCTTGCAAATAGggaaaagaaggaaaatgagGAGTATCTTCCTCCACATTCTCCTCATCCTGAAACTCAATATTGGAATGCACAgaaaaatagaagatttatgGTTTATGTTCATTCCAAGATCATGATAGTGGACGACCTATATATATTAATAGGATCAGCGAATGTGAACCAAAGATCGATGGACGGGCAAAGGGACACAGAAATTGCGATCGGAGGCTACCAATCTCAAGATGGAGTTAATCACTGCATAAGCAAAGGTGATATTCATGCATACAGAATGTCAATGTGGTATGAACACACTGGTAGTGCTGAGAAGTTGTTTTTAGAACCAGAAAGTTTAGAATGTGTGCAGAGAATGTGCTCAATAGGAGATAAAATGTGGAAAATATATAGTAGTGAAGAAATTGTTGATATGGAAGGTGTGCACCTAGTAACTTACCCTATGATAGTAACACAAGATGGATCTGTGAAGGACTTAACTAATGGTGAGGATCATTTTCCTGATACAAAATCTCTAGTGAAAGGGACAAGATCAAAATTATTACCACCTGTCATGACAACTTAG 2277 0.372 MDKKLELIHGTIEATIFNATPYSPSFPFNCLFINGKPAYVTIKIDNKKVAKTTPESERVWNQTFQIHCAHQADSVITITLKTSCSILGKFHIQAQQLKEESLINGFFPLLMENGKPNQELKLRFILWFKPANLEPSWTKLLSSEEFQGLRDATFPQRSNCHVKLYHDAHHSPSFQPPFDNCGIPTKLWEDVYKAIEGAKYLVYIAGWSFNPKMVLVRDPQTEIPHAREIKLGELLKKKAEEGVAVRIMIWDDETSLPFIKNKGVMNTHDEDAFAYFKHTKVVCRKCPRLHNKFPTIFAHHQKTITVDTKAPNSVNDREIMSFLGGVDLCDGRYDTEKHSLFQTLDMESHYHDFYQTNISGASLNKGGPREPWHDAHSCITGEAAWDVLTNFEQRWTKQCDSSLLVPANTLQNLIPISSTSTSLERNWNVQVYRSIDHVSASQLFRKLTVESSIHEAYVEAIRRADKFVYIENQYFIGGCHLWQKDRNSGCRNLIPIEIALKVVNKIKARERFAVYIVIPMWPEGVPESEPVQDILHWTRETMTMMYKLIGEAIIESGEPGHPRDYLNFFCLANREKKENEEYLPPHSPHPETQYWNAQKNRRFMVYVHSKIMIVDDLYILIGSANVNQRSMDGQRDTEIAIGGYQSQDGVNHCISKGDIHAYRMSMWYEHTGSAEKLFLEPESLECVQRMCSIGDKMWKIYSSEEIVDMEGVHLVTYPMIVTQDGSVKDLTNGEDHFPDTKSLVKGTRSKLLPPVMTT 758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g05382 758 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 295 332 IPR001736 GO:0003824
Tsu02g05382 758 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 603 630 IPR001736 GO:0003824
Tsu02g05382 758 SMART pld_4 603 630 IPR001736 GO:0003824
Tsu02g05382 758 SMART pld_4 295 332 IPR001736 GO:0003824
Tsu02g05382 758 PANTHER PHOSPHOLIPASE D 4 758 IPR015679 -
Tsu02g05382 758 SUPERFAMILY Phospholipase D/nuclease 418 687 - -
Tsu02g05382 758 PANTHER PHOSPHOLIPASE D ALPHA 4 758 - -
Tsu02g05382 758 Gene3D Endonuclease Chain A 445 651 - -
Tsu02g05382 758 Gene3D Endonuclease Chain A 175 425 - -
Tsu02g05382 758 SUPERFAMILY Phospholipase D/nuclease 146 405 - -
Tsu02g05382 758 Pfam C2 domain 38 109 IPR000008 -
Tsu02g05382 758 Pfam Phospholipase D Active site motif 606 630 IPR001736 GO:0003824
Tsu02g05382 758 PIRSF PLD_plant 3 758 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Tsu02g05382 758 Pfam Phospholipase D C terminal 675 747 IPR024632 -
Tsu02g05382 758 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 7 124 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g05382 Tsu-Chr2 62393646 62397207 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g05382 30 758 Phospholipase D Gene Family (Wang group) AT1G55180 62.213 0.0 973
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g05382 K01115 - gmx:100807431 1358.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g05382 02 62393646 62397207 Tsu02g05382 02 62393646 62397207 ECH
Tsu02g05382 02 62393646 62397207 Tsu08g00465 08 4621827 4626008 PCT