Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g05380 ATGAGCCGCTACGATAGCCGTTCCTCCGACCCCACTTCCTACCGCGACCGAAGAAGTGATTCCGGTCTAGGTGGTGGTGCACCTGCTTCTACTACCGATGCACCTTCAACCCGAGAGAGTGGCTCTGGTGGTTCTCCTCGGAAAGTTAATTTAGATGGATTACCTCATTTTGAGAAAAACTTCTACAATGAATCCCCTTCTGTTCGGGCAATGACTGAAGCTGAAGTTAATGACTATCGTCTTCGTCGCGAAATCACTGTTGAAGGCAAAGATGTACCTAAACCTATTAAATCCTTTTCCGATGCTTCTTTTCCAGACTATGTGTTGGAAGAAGTTAAAAAAGCTGGCTTTGTTGAACCTACACCCATTCAGTCCCAAGGTTGGCCAATGGCTTTGAAAGGACGCGATCTGATAGGAATTGCAGAGACAGGATCAGGGAAGACTCTGGCTTATTTGTTGCCTGCCATAGTGCATGTTAATGCCCAGCCAATTCTAGATCCTGGGGATGGGCCTATTGTCTTAGTTTTGGCCCCGACACGTGAACTTGCCGTCCAAATACAACAAGAGGCTACTAAATTTGGTGCATCGTCAAGGATTAAGAGCACATGCATATATGGTGGGGTTCCTAAGGGCCCTCAAGTGCGCGATCTCCAGAAAGGTGTTGAAATTGTCATTGCCACTCCGGGAAGGTTAATTGATATGATTGAGTCAAATCATACTAACTTGCGAAGGGTCACATACCTGGTATTGGATGAAGCTGATAGAATGTTGGACATGGGGTTTGATCCTCAGATTCGGAAAATTGTCTCTCAGATTCGTCCAGACCGTCAAACTTTGTACTGGAGTGCTACTTGGCCAAAAGAGGTCGAACAATTGGCAAGGCAATTCCTTTATAATCCATACAAAGTAATTATAGGTTCTGAAGATTTAAAGGCTAACCATGCTATAAAGCAATATGTTGACATTGTTCCTGAAAAGCAAAAATATGATAAATTGGTGAAGTTGTTGGAAGACATCATGGATGGAAGCCGAATATTGATATTCATGGATACTAAAAAAGGATGTGATCAGATTACTAGGCAGCTCCGCATGGATGGTTGGCCTGCCCTTTCAATTCATGGAGACAAAAGTCAAGCAGAGAGAGATTGGGTGCTTTCAGAGTTTAAATCTGGAAAGAGTCCTATAATGACCGCAACAGATGTTGCAGCTCGTGGTTTAGATGTGAAAGATGTGAAGTATGTGATAAATTATGACTTCCCGGGATCACTAGAGGATTATGTTCACCGCATTGGAAGAACTGGGAGAGCTGGTGCAAAAGGAACTGCATACACATTCTTCACAGCAGCTAATGCCAGATTTGCAAAGGAACTTATTAGCATACTTGAGGAAGCTGGACAGAGAGTGAGTCCTGATTTGGCAGCAATGGGGCGTGGTGCACCTCCTCCACCTTCAGGTGGCTTCCGAGACCGGGGGAAGAGTTTTGGCAGTGGTCGCCCATGGAGCTGA 1506 0.4495 MSRYDSRSSDPTSYRDRRSDSGLGGGAPASTTDAPSTRESGSGGSPRKVNLDGLPHFEKNFYNESPSVRAMTEAEVNDYRLRREITVEGKDVPKPIKSFSDASFPDYVLEEVKKAGFVEPTPIQSQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPILDPGDGPIVLVLAPTRELAVQIQQEATKFGASSRIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMIESNHTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSQIRPDRQTLYWSATWPKEVEQLARQFLYNPYKVIIGSEDLKANHAIKQYVDIVPEKQKYDKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELISILEEAGQRVSPDLAAMGRGAPPPPSGGFRDRGKSFGSGRPWS 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g05380 501 SMART ultradead3 116 319 IPR014001 -
Tsu02g05380 501 Pfam DEAD/DEAH box helicase 121 292 IPR011545 GO:0003676|GO:0005524
Tsu02g05380 501 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 97 125 IPR014014 GO:0003724
Tsu02g05380 501 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 169 453 IPR027417 -
Tsu02g05380 501 CDD DEADc_DDX5_DDX17 108 303 - -
Tsu02g05380 501 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 249 257 IPR000629 -
Tsu02g05380 501 MobiDBLite consensus disorder prediction 471 501 - -
Tsu02g05380 501 Pfam Helicase conserved C-terminal domain 328 437 IPR001650 -
Tsu02g05380 501 Gene3D - 60 307 IPR027417 -
Tsu02g05380 501 SMART helicmild6 356 437 IPR001650 -
Tsu02g05380 501 MobiDBLite consensus disorder prediction 1 54 - -
Tsu02g05380 501 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 53 487 - -
Tsu02g05380 501 MobiDBLite consensus disorder prediction 1 17 - -
Tsu02g05380 501 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 331 476 IPR001650 -
Tsu02g05380 501 PANTHER LD32873P 53 487 - -
Tsu02g05380 501 MobiDBLite consensus disorder prediction 30 44 - -
Tsu02g05380 501 CDD SF2_C_DEAD 316 446 - -
Tsu02g05380 501 Gene3D - 309 473 IPR027417 -
Tsu02g05380 501 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 128 303 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g05380 Tsu-Chr2 62375452 62382343 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g05380 84 457 Eukaryotic Initiation Factors Gene Family AT3G19760 34.933 1.39e-77 247
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g05380 K12823 - gmx:100790464 881.322