Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g05377 ATGCGCCTTTCAAAGTTTGGAAAATGTGGAACATTGTTAAGTGTTTGGCAGGACATGCAAGAATGTGGGTATAGTTCAGATGTTGAAGTTTATGAGTCAATCATCAGTGGCCTTGACAACATAGGACAGCTTGAAAATGCTGTTCTTGTTATGGAGGAGGCTTTGCGCAAAGGGTTCTGCCCTAGCAGGCTTATCCTCCCGTTTACTTTTCACATATCTGGTCTTTGGCTACTTCCTCACAACATTACTGATCTAAGTTGTTCAGTTCCAATTGCAGTTGTGTGTACGTCACCAGGGTCGCCGTCAAGGGCACCACCTTATTCTCCATTTCAATCACAAACATCTCTGGCGACTGTGGATACAGAGTTGTCACCGAGACCAAATTCAGAATCTCGCAATGATTCCATCTTAATGAAGAAAAAGATGTCTCACAGGAAGTTCGAGCACCCAAGACATGGTTCATTGGGATTTCTCCCAAGGAAGCGTGCTGCTCGTCACAGAGGAAAAGTGAAGGCTTTCCCTAAGGATGACCCAACCAAGCCACCCAAGCTTACTGCCTTTTTGGGTTACAAGGCTGGTATGACCCACATTGTCAGAGAAGTCGAGAAACCAGGATCCAAGCTTCACGAGAAGGAGACTTGTTCTATAAGAACTGGTGCAAAGAAGAAGGCTTTCAGCAAGTACTCCAAGCAGTATGAAAGTGATGAAGGAAAGAAAAACATTCAGACACAGCTTGAGAAACTGAAGTATGCAACTGTCATCCGTGTGTTGGCTCACACTCAGATCAGGAAAATGAAGGGATTGAAGCAGAAGAAGGCCCATATCATGGAAATTCAGGTTAATGGCGGTACTATTGCCCAGAAGGTGGACTTTGCATACAATTTCTTTGAGAAACAGGTTCATATTGATGCTGTCTTCCAGAAGGATGAAATGATTGACATCATTGGTGTGACAAAAGGTAAGGGTTATGAAGGTGTTGTTACTCGTTGGGGTGTTACCCGTCTTCCCCGTAAGACTCATAAGGGTTTGAGGAAGGTTGCTTGTATTGGTGCATGGCATCCAGCTAGAGTTTCTTTCACTGTTGCAAGAGCTGGTCAGAACGGTTACCATCACAGAACTGAGCTGAACAAGAAGATTTACAAGCTTGGCAAAACTGGAGAAGAGACCCACGATGCTCAGACTGAGTTTGATAGGACTGAGAAAGACATCACCCCAATGGGTGGTTTCCCCCACTATGGTATTGTGAAGGAAGATTATCTGATGATCAAGGGAGGCTGTGTTGGTCCCAAGAAGAGGGTTGTTACATTGCGTCAGTCCCTTCTCAAGCAGACTTCCCGTCTTGCTTTGGAAGATATCAAACTCAACTTGGAAGACTTCCCGTCTTCCAAGTTCGGCCATGGTCGTTTCCAGACAACACAAGAGAAGCAAAAGTTCTATGGACGCCTCAAGGCTTAA 1455 0.4495 MRLSKFGKCGTLLSVWQDMQECGYSSDVEVYESIISGLDNIGQLENAVLVMEEALRKGFCPSRLILPFTFHISGLWLLPHNITDLSCSVPIAVVCTSPGSPSRAPPYSPFQSQTSLATVDTELSPRPNSESRNDSILMKKKMSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPTKPPKLTAFLGYKAGMTHIVREVEKPGSKLHEKETCSIRTGAKKKAFSKYSKQYESDEGKKNIQTQLEKLKYATVIRVLAHTQIRKMKGLKQKKAHIMEIQVNGGTIAQKVDFAYNFFEKQVHIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHKGLRKVACIGAWHPARVSFTVARAGQNGYHHRTELNKKIYKLGKTGEETHDAQTEFDRTEKDITPMGGFPHYGIVKEDYLMIKGGCVGPKKRVVTLRQSLLKQTSRLALEDIKLNLEDFPSSKFGHGRFQTTQEKQKFYGRLKA 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g05377 484 ProSitePatterns Ribosomal protein L3 signature. 306 329 IPR019926 -
Tsu02g05377 484 MobiDBLite consensus disorder prediction 102 134 - -
Tsu02g05377 484 PANTHER 60S RIBOSOMAL PROTEIN L3-LIKE 220 484 - -
Tsu02g05377 484 PANTHER 60S RIBOSOMAL PROTEIN L3-LIKE 142 216 - -
Tsu02g05377 484 Gene3D Ribosomal protein L3, domain 3 142 184 IPR044892 -
Tsu02g05377 484 Gene3D Ribosomal protein L3, domain 3 320 368 IPR044892 -
Tsu02g05377 484 PANTHER 60S RIBOSOMAL PROTEIN L3-RELATED 220 484 IPR045077 GO:0003735|GO:0005840|GO:0006412
Tsu02g05377 484 Gene3D - 220 301 - -
Tsu02g05377 484 Gene3D Tetratricopeptide repeat domain 2 75 IPR011990 GO:0005515
Tsu02g05377 484 MobiDBLite consensus disorder prediction 106 132 - -
Tsu02g05377 484 PANTHER 60S RIBOSOMAL PROTEIN L3-RELATED 142 216 IPR045077 GO:0003735|GO:0005840|GO:0006412
Tsu02g05377 484 Pfam Ribosomal protein L3 142 215 IPR000597 GO:0003735|GO:0005840|GO:0006412
Tsu02g05377 484 Pfam Ribosomal protein L3 220 459 IPR000597 GO:0003735|GO:0005840|GO:0006412
Tsu02g05377 484 Gene3D Translation factors 185 215 - -
Tsu02g05377 484 Gene3D Translation factors 302 480 - -
Tsu02g05377 484 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 27 61 IPR002885 -
Tsu02g05377 484 SUPERFAMILY Translation proteins 145 447 IPR009000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g05377 Tsu-Chr2 62337033 62339469 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g05377 142 482 Cytoplasmic Ribosomal Protein Gene Family AT1G43170 74.227 0.0 573
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g05377 K02925 K10999 pop:7492475 595.119