Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g05377 ATGCGCCTTTCAAAGTTTGGAAAATGTGGAACATTGTTAAGTGTTTGGCAGGACATGCAAGAATGTGGGTATAGTTCAGATGTTGAAGTTTATGAGTCAATCATCAGTGGCCTTGACAACATAGGACAGCTTGAAAATGCTGTTCTTGTTATGGAGGAGGCTTTGCGCAAAGGGTTCTGCCCTAGCAGGCTTATCCTCCCGTTTACTTTTCACATATCTGGTCTTTGGCTACTTCCTCACAACATTACTGATCTAAGTTGTTCAGTTCCAATTGCAGTTGTGTGTACGTCACCAGGGTCGCCGTCAAGGGCACCACCTTATTCTCCATTTCAATCACAAACATCTCTGGCGACTGTGGATACAGAGTTGTCACCGAGACCAAATTCAGAATCTCGCAATGATTCCATCTTAATGAAGAAAAAGATGTCTCACAGGAAGTTCGAGCACCCAAGACATGGTTCATTGGGATTTCTCCCAAGGAAGCGTGCTGCTCGTCACAGAGGAAAAGTGAAGGCTTTCCCTAAGGATGACCCAACCAAGCCACCCAAGCTTACTGCCTTTTTGGGTTACAAGGCTGGTATGACCCACATTGTCAGAGAAGTCGAGAAACCAGGATCCAAGCTTCACGAGAAGGAGACTTGTTCTATAAGAACTGGTGCAAAGAAGAAGGCTTTCAGCAAGTACTCCAAGCAGTATGAAAGTGATGAAGGAAAGAAAAACATTCAGACACAGCTTGAGAAACTGAAGTATGCAACTGTCATCCGTGTGTTGGCTCACACTCAGATCAGGAAAATGAAGGGATTGAAGCAGAAGAAGGCCCATATCATGGAAATTCAGGTTAATGGCGGTACTATTGCCCAGAAGGTGGACTTTGCATACAATTTCTTTGAGAAACAGGTTCATATTGATGCTGTCTTCCAGAAGGATGAAATGATTGACATCATTGGTGTGACAAAAGGTAAGGGTTATGAAGGTGTTGTTACTCGTTGGGGTGTTACCCGTCTTCCCCGTAAGACTCATAAGGGTTTGAGGAAGGTTGCTTGTATTGGTGCATGGCATCCAGCTAGAGTTTCTTTCACTGTTGCAAGAGCTGGTCAGAACGGTTACCATCACAGAACTGAGCTGAACAAGAAGATTTACAAGCTTGGCAAAACTGGAGAAGAGACCCACGATGCTCAGACTGAGTTTGATAGGACTGAGAAAGACATCACCCCAATGGGTGGTTTCCCCCACTATGGTATTGTGAAGGAAGATTATCTGATGATCAAGGGAGGCTGTGTTGGTCCCAAGAAGAGGGTTGTTACATTGCGTCAGTCCCTTCTCAAGCAGACTTCCCGTCTTGCTTTGGAAGATATCAAACTCAACTTGGAAGACTTCCCGTCTTCCAAGTTCGGCCATGGTCGTTTCCAGACAACACAAGAGAAGCAAAAGTTCTATGGACGCCTCAAGGCTTAA 1455 0.4495 MRLSKFGKCGTLLSVWQDMQECGYSSDVEVYESIISGLDNIGQLENAVLVMEEALRKGFCPSRLILPFTFHISGLWLLPHNITDLSCSVPIAVVCTSPGSPSRAPPYSPFQSQTSLATVDTELSPRPNSESRNDSILMKKKMSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPTKPPKLTAFLGYKAGMTHIVREVEKPGSKLHEKETCSIRTGAKKKAFSKYSKQYESDEGKKNIQTQLEKLKYATVIRVLAHTQIRKMKGLKQKKAHIMEIQVNGGTIAQKVDFAYNFFEKQVHIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHKGLRKVACIGAWHPARVSFTVARAGQNGYHHRTELNKKIYKLGKTGEETHDAQTEFDRTEKDITPMGGFPHYGIVKEDYLMIKGGCVGPKKRVVTLRQSLLKQTSRLALEDIKLNLEDFPSSKFGHGRFQTTQEKQKFYGRLKA 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g05377 484 ProSitePatterns Ribosomal protein L3 signature. 306 329 IPR019926 -
Tsu02g05377 484 MobiDBLite consensus disorder prediction 102 134 - -
Tsu02g05377 484 PANTHER 60S RIBOSOMAL PROTEIN L3-LIKE 220 484 - -
Tsu02g05377 484 PANTHER 60S RIBOSOMAL PROTEIN L3-LIKE 142 216 - -
Tsu02g05377 484 Gene3D Ribosomal protein L3, domain 3 142 184 IPR044892 -
Tsu02g05377 484 Gene3D Ribosomal protein L3, domain 3 320 368 IPR044892 -
Tsu02g05377 484 PANTHER 60S RIBOSOMAL PROTEIN L3-RELATED 220 484 IPR045077 GO:0003735|GO:0005840|GO:0006412
Tsu02g05377 484 Gene3D - 220 301 - -
Tsu02g05377 484 Gene3D Tetratricopeptide repeat domain 2 75 IPR011990 GO:0005515
Tsu02g05377 484 MobiDBLite consensus disorder prediction 106 132 - -
Tsu02g05377 484 PANTHER 60S RIBOSOMAL PROTEIN L3-RELATED 142 216 IPR045077 GO:0003735|GO:0005840|GO:0006412
Tsu02g05377 484 Pfam Ribosomal protein L3 142 215 IPR000597 GO:0003735|GO:0005840|GO:0006412
Tsu02g05377 484 Pfam Ribosomal protein L3 220 459 IPR000597 GO:0003735|GO:0005840|GO:0006412
Tsu02g05377 484 Gene3D Translation factors 185 215 - -
Tsu02g05377 484 Gene3D Translation factors 302 480 - -
Tsu02g05377 484 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 27 61 IPR002885 -
Tsu02g05377 484 SUPERFAMILY Translation proteins 145 447 IPR009000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g05377 Tsu-Chr2 62337033 62339469 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g05377 142 482 Cytoplasmic Ribosomal Protein Gene Family AT1G43170 74.227 0.0 573