Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g05365 ATgaacaacaataataacaacaacagcaacatcGTCTCGAGGAATGGTAACGGAACAACTCAAGCTTGTGCCGCTTGTAAATACCAACGTAGGAAGTGTGGTCCAACCTGCATTCTTGCACCATATTTTCCTCACGATCGTCAAAAACAATTCTTAAATGCTCATAAATTATTTGGTGTTGGTAAAATCACAAACATGATTAAGACTGTTCCGCCTCAACTTCGAGATGTAACTATGGCAACTATCATGTATCAATCTGATATGCGTGCCATGGATCCTGTTGGTGGTTGTTATAGAATTCTTCAACAGCTTCAATCTCAATATGAATTTTTTGAAGCTGAGCTTGATTTAACTCGTCAACATATTGCTCTTTGTCGAGCATCATCGGcacaatcacaatcacaacAACTTGCTGCTAGTTCtaatcatcatcctcatcatcattataatgaTATGatcatgaataataataatagtaatgatGATGCTTCTGCTgctttgaatattttaaatcaGTTTAATCAGCAGCATTTTGTTGAAGAACAAATGAATATTAATATACTGCCTCAACCGCAACAACTGCAACCGCAATATGTTGATGATGTCGATCTTAACCCTAATTATGTTCCTTTACAACATGAGGATCTTAATACATGGGTGAACTCTATACCGTTGTCGCCGTTAACGTTGCAGGACAACAAAAAAGAGGTGGAGGAAGAGGAAGGAGAAAATGATGAGCTTGTTGGTGATAATCAAGAAAGTGATCAGAAACCTGTTTTTGACCTAATCAAAGAAATGAATTCTTTGGATACCAATGGAAGTGATAATATTGATCCCGGGCACCAggtttgttaa 855 0.3275 MNNNNNNNSNIVSRNGNGTTQACAACKYQRRKCGPTCILAPYFPHDRQKQFLNAHKLFGVGKITNMIKTVPPQLRDVTMATIMYQSDMRAMDPVGGCYRILQQLQSQYEFFEAELDLTRQHIALCRASSAQSQSQQLAASSNHHPHHHYNDMIMNNNNSNDDASAALNILNQFNQQHFVEEQMNINILPQPQQLQPQYVDDVDLNPNYVPLQHEDLNTWVNSIPLSPLTLQDNKKEVEEEEGENDELVGDNQESDQKPVFDLIKEMNSLDTNGSDNIDPGHQVC 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g05365 284 Pfam Lateral organ boundaries (LOB) domain 22 119 IPR004883 -
Tsu02g05365 284 ProSiteProfiles LOB domain profile. 21 122 IPR004883 -
Tsu02g05365 284 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 18 272 - -
Tsu02g05365 284 PANTHER LOB DOMAIN PROTEIN 18 272 - -
Tsu02g05365 284 MobiDBLite consensus disorder prediction 235 259 - -
Tsu02g05365 284 Coils Coil 230 257 - -
Tsu02g05365 284 Coils Coil 101 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g05365 Tsu-Chr2 62200010 62200864 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g05365 21 136 AS2 family AT3G13850 58.621 5.80e-45 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Tsu02g05365 LOB 5.4e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g05365 - - mtr:MTR_2g100020 374.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g05365 02 62200010 62200864 Tsu08g00494 08 5098558 5099831 PCT