Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g05363 ATGATCAAAGGTTTTATGTTTCAACAACAATCATTTGAGGAAGAAAACATGTCTAATTTGACTTCTGCATCTGGTGAAGCTAGTGCTAATTCTTCAGGTAACAGAAATGAAATTGGTACTAATTATCATCAACAATACTTAGCTCCATCACAATCAACTCATCAAACTCATGATGAAGCTCCTCCACCtaagaaaagaagaaaccttCCTGGCAACCCAGACCCTGAAGCTGAAGTTATAGCTTTATCACCAAAAACACTTATGGCAACAAACAGATTCATTTGTGAGATCTGTAACAAAGGATTTCAAAGAGATCAAAATCTTCAACTTCACAAAAGAGGACACAATTTACCATGGAAGTTGAAGCAAAGAGCAAGCAATGAAATAATAAGGAAGAAAGTTTATGTTTGTCCAGAACCAACTTGTGTGCACCATGACCCATCAAGAGCCTTAGGAGACTTAACTGGTATCAAGAAGCACTTTTGCAGAAAGCACGGTGAGAAGAAGTGGAAATGTGACAAGTGCTCTAAGAAGTATGCTGTTCAATCAGACTGGAAAGCTCACTCCAAAACATGTGGCACAAGAGAATACAAATGTGACTGTGGTACCCTCTTCTCAAGGAGGGACAGTTTCATAACTCATAGAGCCTTTTGTGATGCATTAGCAGAAGAAAGTTCAAAAGCTATAATCCCTCCTCCTTCTCCAATTCCTCAACCAAATTCTCACAATATGATCAATCTTCAAACTCAAGATTTCTCATTGAAGAAAGAGCATCAAAATTTCAGCTTTTTAAGACAAGAACAAGAAATTCAAATACCCTCTTGGCTTTCTTCTTCAAACTATTCAAGATTAGATCAAATTCAAAGTGTTCATGAAAACCCTAACCCTAGAAATGGTCCCACATTTCCAACCTACCAACAACCATATGAAATTTCACCTCACATGTCAGCTACAGCATTGTTACAGAAAGCAGCTCAGATGGGTTCAACCAGCTCATCACAACAATCCATGATCATGATAAGTGGGACCCACAAACAACATTGTCACGTGTCTGTTGATGACAATAATTTGTCCTCATGTGAAGACCAAATGATaaacaatttttcttcttctgggTTTGATGGAACTTCTTTTGAGGATACTTATGCTAAGAATATTCTTAATtcaaatcatcatcatgatcatcATAATATTAATCATAATGATAATGATGGCGGTGTCGGTGGTGGTGTCGGTGCCGGAGGAAATGATGGATTTACAAGAGATTTCTTGGGTCTTAGACCACTTTCTGATAGTGAAATTCTCAACATTGCTGGTATGGGAAACTGCATGAACTCTTCTAATTCCCATCATGAACAAAACCAAACCCAAAAACCATGGCAAGGTAATTAG 1392 0.3628 MIKGFMFQQQSFEEENMSNLTSASGEASANSSGNRNEIGTNYHQQYLAPSQSTHQTHDEAPPPKKRRNLPGNPDPEAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHKRGHNLPWKLKQRASNEIIRKKVYVCPEPTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYKCDCGTLFSRRDSFITHRAFCDALAEESSKAIIPPPSPIPQPNSHNMINLQTQDFSLKKEHQNFSFLRQEQEIQIPSWLSSSNYSRLDQIQSVHENPNPRNGPTFPTYQQPYEISPHMSATALLQKAAQMGSTSSSQQSMIMISGTHKQHCHVSVDDNNLSSCEDQMINNFSSSGFDGTSFEDTYAKNILNSNHHHDHHNINHNDNDGGVGGGVGAGGNDGFTRDFLGLRPLSDSEILNIAGMGNCMNSSNSHHEQNQTQKPWQGN 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g05363 463 Gene3D Classic Zinc Finger 148 228 - -
Tsu02g05363 463 MobiDBLite consensus disorder prediction 393 413 - -
Tsu02g05363 463 ProSitePatterns Zinc finger C2H2 type domain signature. 95 115 IPR013087 -
Tsu02g05363 463 MobiDBLite consensus disorder prediction 13 77 - -
Tsu02g05363 463 Pfam Zinc-finger double-stranded RNA-binding 93 115 IPR022755 -
Tsu02g05363 463 ProSiteProfiles Zinc finger C2H2 type domain profile. 93 115 IPR013087 -
Tsu02g05363 463 MobiDBLite consensus disorder prediction 13 57 - -
Tsu02g05363 463 SMART c2h2final6 93 115 IPR013087 -
Tsu02g05363 463 SMART c2h2final6 135 165 IPR013087 -
Tsu02g05363 463 SMART c2h2final6 170 190 IPR013087 -
Tsu02g05363 463 PANTHER PROTEIN INDETERMINATE-DOMAIN 7 19 442 - -
Tsu02g05363 463 Gene3D Classic Zinc Finger 72 139 - -
Tsu02g05363 463 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 19 442 - -
Tsu02g05363 463 SUPERFAMILY beta-beta-alpha zinc fingers 92 190 IPR036236 -
Tsu02g05363 463 MobiDBLite consensus disorder prediction 58 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g05363 Tsu-Chr2 62181628 62184682 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g05363 14 447 IDZ Gene Family AT1G55110 53.004 2.92e-139 406
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tsu02g05363 zf-C2H2_jaz 4.7e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g05363 K25870 - gmx:100820609 504.982
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g05363 02 62181628 62184682 Tsu08g00497 08 5114471 5117212 PCT