Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g05351 ATGGGGCATCACTCTTGCTGCAACAAACAGAAAGTGAAAAGAGGACTATGGTCacctgaagaagatgaaaaactcATCAACTACATCACTAATTATGGACATGGTTGTTGGAGTTCTGTCCCTAAACTTGCAGGGTTGCAAAGGTGTGGAAAGAGTTGCAGATTGAGATGGATTAATTATCTAAGACCTGATTTGAAACGTGGAAGTTTTTCTCCACAAGAAGCTGCTCTTATTATAGAACTTCATACTATTCTAGGCAACAGGTGGGCTCAGATAGCAAAGCATTTACCAGGAAGAACAGATAATGAAGTGAAGAACTTTTGGAATTCAAGCATAAAAAAGAAACTACTTTCACATGATCTTGTTCCTTCTTTAACCACATTTTCTGATCATATTCACTGTCCTACAAATGTTTCTATGGAAAGTTTCTTCCCTTTATTTAATGACAATCCTACCCTTAACAACTTAGATCATCACCTATACCTTCCTATCAATATCCCATCTCCAATCCTACAAGATCAAAATGATATCAAGAATATTCTTGATATTAACAATTTCAATGCAAATTTCTTACATGTTCATCAAAATAATCCAATATTACCAGAAATTACAATACCATTATCCAATAATATTGTTCCACCTTCTTATGATCAATTAGATACATGGTCATTATTCCAACATCTCAATCCAAATATTCAAGAAAATCATCAAATTATTGCCACAAAAAGTGAAGGTGCCACACAAAATTTTGATAttgttgataataattttaTCAATCCAATTCCAAATACTTGGCATCATTTGGTTGAACTTGAGCCTATTGTGCCAAAAGTATGTGAAACTATAAAAGATGATTATGTTTGTAGCattccattttctttttctgcttCTTCACAAGAAcatgatcatcatcatcatcaagttATCAACCAAATTGAAGAGAGTATAATTTGTCCAcaagatcatcatcatcatcaacaaattgTGGCTGCATCAAATAATGATCAAGTGGAGTTTATTGATTCTCTCATCATGTCATCATTGCcatcttcaacaacaacatcttcatcatcaccatTATCATTCTATCAACCACCAGACAAAATTCTCACCAAACCAATCCTTCCTTCAAGTAATTGA 1140 0.2965 MGHHSCCNKQKVKRGLWSPEEDEKLINYITNYGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGSFSPQEAALIIELHTILGNRWAQIAKHLPGRTDNEVKNFWNSSIKKKLLSHDLVPSLTTFSDHIHCPTNVSMESFFPLFNDNPTLNNLDHHLYLPINIPSPILQDQNDIKNILDINNFNANFLHVHQNNPILPEITIPLSNNIVPPSYDQLDTWSLFQHLNPNIQENHQIIATKSEGATQNFDIVDNNFINPIPNTWHHLVELEPIVPKVCETIKDDYVCSIPFSFSASSQEHDHHHHQVINQIEESIICPQDHHHHQQIVAASNNDQVEFIDSLIMSSLPSSTTTSSSSPLSFYQPPDKILTKPILPSSN 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g05351 379 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Tsu02g05351 379 PANTHER TRANSCRIPTION FACTOR MYB26 2 363 - -
Tsu02g05351 379 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Tsu02g05351 379 PANTHER MYB DOMAIN PROTEIN 55 2 363 - -
Tsu02g05351 379 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Tsu02g05351 379 Gene3D - 69 116 - -
Tsu02g05351 379 CDD SANT 17 61 IPR001005 -
Tsu02g05351 379 SMART sant 13 63 IPR001005 -
Tsu02g05351 379 SMART sant 66 114 IPR001005 -
Tsu02g05351 379 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Tsu02g05351 379 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Tsu02g05351 379 Pfam Myb-like DNA-binding domain 67 109 IPR001005 -
Tsu02g05351 379 CDD SANT 69 109 IPR001005 -
Tsu02g05351 379 Gene3D - 11 67 - -
Tsu02g05351 379 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g05351 Tsu-Chr2 62098845 62100412 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g05351 1 118 MYB Transcription Factor Family AT3G13890 95.763 1.82e-80 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu02g05351 Myb_DNA-binding 1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g05351 K09422 - gmx:102662609 425.631