Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g05349 ATGGCACGGGGGAGGAGGATTAGGGCAAGGTTGCGGAGGAGTAATCTCTATACATTTGGTTGTCTTCGGCCGAATGTTTCCGAGGAGGTGCCTCATCCACTTCAAGGTCCTGGTTACTCAAGAACCGTGTATTGCAACCAGCCTCAACTCCATGAAAAGAGATCTCTATTTTATTGCAAGAATAATATATCAACAACTAAATATAATGCTCTCATGTTTTTTCCTAAGGCACTGTTCGAACAGTTTCGAAGGGTTGCCAACATATATTTCCTTTTAGCTGCTTGTCTCTCTGCATCTCCAATTTCACCTTTCAGCGCGTTGAGCATGATTGCTCCTTTGGTTTTTGTTGTGGGGCTTAGTATGGCAAAAGAAGCATTGGAGGATTCACGCAGGTTTCTCCAAGACGTTAAGGTTAATCGCCGGAAAGCTAGTCTCCATAGAGGCAATGGTGTTTTTGGTCTTAGGTCATGGCAGAAAATTATGGTTGGGGATATAGTAAAAGTAGAAAAGGACCAATTTTTTCCGGCTGACTTGCTTCTCTTGTCTTCAAGTGATGATGGGGATGGGATATGCTATGTAGAGACCATGAATTTAGATGGAGAGACAAACTTGAAGGTGAAAAGATCTTTGGAGGCTACCCTGTCCCTTGATAACGATGAAGCTTTTAAGGATTTCACTGGAACAATACGTTGTGAAGACCCGaatccaaatctttacactttTGTTGGGAACCTTGAGTATGATCGTCAGGTTTATCCTCTTGATCCTGGTCATATTCTCCTCCGAGATTCAAAGCTTAGGAACACAGAATATATCTATGGGGTGGTCATTTTCACCGGCCACGACAGCAAAGTCATGCAGAATTCTACAAAATCCCCTTCAAAAAGAAGCACAATAGAGAAAAAGATGGATCATATCATATACACTCTTTTCACTGTCCTTATATTGATATCCTTTATTAGTTCAATAGGATTTGTTGTTAAGACTAAGTACCAGGCCACAGAGTGGTGGTATATACGGCCCGACAATATTGAATATCAGTATGATCCTGGGAAAATTGGATTGGCTGGGATGAGCCATCTGATAACTGCCCTTATTCTTTATGGATATTTGATACCCATCTCTCTTTATGTTTCAATTGAGATTGTTAAGGTATTACAGGCCACCTTCATTAACCAAGACCTTCAAATGTATGATGAAGAAACTGGAACTCCTGCTGAAGCACGAACATCCAATCTGAATGAAGAGTTGGGTCAGGTAGACACCATCCTCTCTGATAAAACTGGCACTTTAACCTGCAATCAGATGGACTTTTTGAAGTGCTCCATTGCTGGTACTTCCTATGGTGTACGTTCCAGTGAAGTTGAAGTTGCTGCAGCAAAGCAAATGGCTTCTGATCTTGATGAGGAAGATTCGGATCTCTCTAATTTCCCCATGCAAAAGAAGGGTAATGCGCCGTGGGAAAATGTTAGAAGAGATGAAGAAATTGAACTTGAGCCAGTTTTTACTTCTAAGGGTGGTGAGGATCAAAGGCCTTCCATAAAGGGATTTGGTTTTGTTGACAGCCGCCTCATGGATTGCAATTGGTCGAAAGATCCCAATGCTGCTGTCATTCTGTTGTTTTTCCGGATACTAGCAGTCTGCCATACTGCCATTCCCGAGTTTAATGAGGAGAGCGACAGTTGTACTTATGAAGCCGAATCACCTGATGAAGGGGCTTTTCTTGTAGCTGCTAGAgaatttggttttgaattttaTAGAAGAACTCAATCAACTGTCGTTGTACGTGAAAGAATTTCTGCTTCAGGACAAGTGGTTGAAAGAGAGTATAAAATATTGAATCTGCTGGATTTTACTAGCAAAAGAAAGCGTATGTCGGTGATTGTGCGTGATGAGGAGGGAAACATTATTCTTTTATGCAAAGGAGCTGACAGTATCATATTTGATCGGTTATCTAAGAATGGAAAGAAGTATTTGGATGCCACTTCTAGGCATTTGAATGAATATGGAGAAGTAGGTTTGAGAACACTAGCCCTGGCTTACAGAAATCTTGATGAACAAGAGTACTCTGATTGGAACAACGAGTTTCAGAAAGCCAAGACAACTGTTGGGCCTGATAGAGACGCAATGCTTGAGAAGGTATCAGATAGTATGGAAAGAGAGTTGATTCTTGTTGGTGCTACTGCTGTGGAAGACAAGCTGCAGAAAGGGgtGCCTCAATGCATTGATAAACTTGCTCAAGCTGGTCTAAAGATCTGGGTCTTGACAGGGGATAAGATGGAAACTGCAATCAATATTGGATTTGCATGTAGTTTGCTTCGACAGGGCATGAAGCAAATCTGTATCTCTACTGCAAATTCAGATTCAGTAATCAATGATGGGAAAGAGGTAATCAAAGGCGACATCTTGACTCAAATCACCAATGCCTCACAATCGATGAAGCTGGAGAAGGACCCACATGCTGCGTTTGCATTAATTATTGACGGAAAAACTCTAACATATGCTCTAGAAGATGATGTCAAACACCACTTTTTGGCATTAGCTGTTGAATGTGCATCTGTCATTTGCTGCCGCGTGTCTCCCAAGCAAAAGGCTTTGGTAACAAGATTAGTGAAAGAAGGAACTGGCAAGACCACTTTAGCAATAGGTGATGGTGCAAATGATGTCGGCATGATTCAAGAGGCTGACATTGGAGTTGGAATCAGTGGGGTTGAAGGTATGCAGGCAGTGATGGCTAGTGACTTTTCCATTGCTCAATTTCGATTTTTGGAGCGGCTTCTGGTAGTCCATGGACACTGGTGTTACAAGAGAATTGCACAAATGATATGTTATTTCTTCTACAAAAATATAGCATTTGGCCTCACAATATTCTATTTTGAGGCCTTTGCGGGCTTCTCTGGTCAATCGGTTTATGATGATTGGTACATGATATTGTTTAATGTCGTTCTTACATCATTGCCTGTCATTTCACTTGGAGTTTTTGAACAAGATGTGCCATCTGAAGTTTGCTTACAGTTTCCAGCACTATATCAGCAAGGACCCAAAAATTTGTTCTTTGACTGGTATAGAATATTGGGATGGATGGGGAATGGTCTGTATTCTTCCCTTGTCATCTTCTTCCttgtcatcatcatcttctatGACCAAGCATTCCGTCTGAATGGCCAGACTGCAGACATGGCTGCTGTTGGGACCGTAATGTTCACCTCCATCATTTGGGCTGTGAACTGCCAGATTGCCTTGACAATGAGCCATTTTACATGGATACAACACCTCTTTGTGTGGGGCAGCATAGCCAGTTGGTACCTCTTTCTCTTATTATATGGCATGCTTTCTCCAGTATATTCCAAAACTGCGTACCAAATATTGGTTGAAGTGCTTGCTCCTGCTCCTATTTATTGGGCAGCAACCATTCTAGTAACTGTTACATGCAATCTTCCTTATCTTGCCCACATATCGTTCCAAAGGTGTTTTAATCCCATGGATCATCACATTATCCAAGAAATCAAGTACTACAAGAAGGACATTGAAGATCAACACATGTGGACGAGGGAGCGGTCTAAAGCAAGACAAGAAACAAAGATTGGTTTCACAGCAAGAGTAGAAGCAAAGATCAGGCAGCTGAAAGGGAGGCTGCAGAAGAAGCAATCTATAACGGGGGTTTTGTCCCCATCATGA 3678 0.4133 MARGRRIRARLRRSNLYTFGCLRPNVSEEVPHPLQGPGYSRTVYCNQPQLHEKRSLFYCKNNISTTKYNALMFFPKALFEQFRRVANIYFLLAACLSASPISPFSALSMIAPLVFVVGLSMAKEALEDSRRFLQDVKVNRRKASLHRGNGVFGLRSWQKIMVGDIVKVEKDQFFPADLLLLSSSDDGDGICYVETMNLDGETNLKVKRSLEATLSLDNDEAFKDFTGTIRCEDPNPNLYTFVGNLEYDRQVYPLDPGHILLRDSKLRNTEYIYGVVIFTGHDSKVMQNSTKSPSKRSTIEKKMDHIIYTLFTVLILISFISSIGFVVKTKYQATEWWYIRPDNIEYQYDPGKIGLAGMSHLITALILYGYLIPISLYVSIEIVKVLQATFINQDLQMYDEETGTPAEARTSNLNEELGQVDTILSDKTGTLTCNQMDFLKCSIAGTSYGVRSSEVEVAAAKQMASDLDEEDSDLSNFPMQKKGNAPWENVRRDEEIELEPVFTSKGGEDQRPSIKGFGFVDSRLMDCNWSKDPNAAVILLFFRILAVCHTAIPEFNEESDSCTYEAESPDEGAFLVAAREFGFEFYRRTQSTVVVRERISASGQVVEREYKILNLLDFTSKRKRMSVIVRDEEGNIILLCKGADSIIFDRLSKNGKKYLDATSRHLNEYGEVGLRTLALAYRNLDEQEYSDWNNEFQKAKTTVGPDRDAMLEKVSDSMERELILVGATAVEDKLQKGVPQCIDKLAQAGLKIWVLTGDKMETAINIGFACSLLRQGMKQICISTANSDSVINDGKEVIKGDILTQITNASQSMKLEKDPHAAFALIIDGKTLTYALEDDVKHHFLALAVECASVICCRVSPKQKALVTRLVKEGTGKTTLAIGDGANDVGMIQEADIGVGISGVEGMQAVMASDFSIAQFRFLERLLVVHGHWCYKRIAQMICYFFYKNIAFGLTIFYFEAFAGFSGQSVYDDWYMILFNVVLTSLPVISLGVFEQDVPSEVCLQFPALYQQGPKNLFFDWYRILGWMGNGLYSSLVIFFLVIIIFYDQAFRLNGQTADMAAVGTVMFTSIIWAVNCQIALTMSHFTWIQHLFVWGSIASWYLFLLLYGMLSPVYSKTAYQILVEVLAPAPIYWAATILVTVTCNLPYLAHISFQRCFNPMDHHIIQEIKYYKKDIEDQHMWTRERSKARQETKIGFTARVEAKIRQLKGRLQKKQSITGVLSPS 1225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g05349 1225 SUPERFAMILY Calcium ATPase, transmembrane domain M 52 1154 IPR023298 -
Tsu02g05349 1225 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 524 688 IPR023299 GO:0000166
Tsu02g05349 1225 Gene3D - 421 433 IPR023214 -
Tsu02g05349 1225 Pfam Phospholipid-translocating P-type ATPase C-terminal 910 1160 IPR032630 -
Tsu02g05349 1225 Gene3D - 112 290 - -
Tsu02g05349 1225 Coils Coil 450 470 - -
Tsu02g05349 1225 SUPERFAMILY Calcium ATPase, transduction domain A 147 288 IPR008250 -
Tsu02g05349 1225 Gene3D - 726 922 IPR023214 -
Tsu02g05349 1225 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 851 963 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Tsu02g05349 1225 CDD P-type_ATPase_APLT_Dnf-like 61 1042 - -
Tsu02g05349 1225 Pfam Cation transport ATPase (P-type) 548 652 - -
Tsu02g05349 1225 Pfam Phospholipid-translocating ATPase N-terminal 43 110 IPR032631 -
Tsu02g05349 1225 Gene3D - 434 461 IPR023299 GO:0000166
Tsu02g05349 1225 SUPERFAMILY HAD-like 419 937 IPR036412 -
Tsu02g05349 1225 SFLD Haloacid Dehalogenase 406 933 - -
Tsu02g05349 1225 TIGRFAM ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase 58 1168 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016021|GO:0140326
Tsu02g05349 1225 PRINTS P-type cation-transporting ATPase superfamily signature 424 438 - -
Tsu02g05349 1225 PRINTS P-type cation-transporting ATPase superfamily signature 882 901 - -
Tsu02g05349 1225 SFLD p-type atpase 406 933 IPR044492 -
Tsu02g05349 1225 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 1 1221 - -
Tsu02g05349 1225 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 1 1221 - -
Tsu02g05349 1225 ProSitePatterns E1-E2 ATPases phosphorylation site. 426 432 IPR018303 -
Tsu02g05349 1225 Gene3D - 592 725 IPR023299 GO:0000166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g05349 Tsu-Chr2 62061093 62067378 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g05349 1 1217 Primary Pumps ATPases AT1G17500 74.959 0.0 1897
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g05349 K01530 - gmx:100778710 2153.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g05349 02 62061093 62067378 Tsu08g00524 08 5483148 5489497 PCT