Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g05348 ATGGAACCTCGTATTGGTAACAAGTTCCGTCTTGGCCGCAAAATTGGTAGCGGATCCTTCGGCGAGATCTATCTCgGTACAAATGTTCAGACAAATGAAGAAGTTGCAATTAAGCTTGAAAATGTCAAAACCAAGCATCCTCAATTGTTGTATGAATCAAAGTTGTATAAAGTGCTTCAAGGAGGAACTGGTATCCCAAATGTGAGATGGTTTGGTGTAGAAGGAGAGTACAATGTTCTTGTGATGGATTTACTGGGACCTAGTCTCGAGGATTTATTCAGTTTTTGTAGTCGGAAATTGTCTCTTAAAACTGTACTCATGCTTGCTGATCAGATGATAAATCGAGTTGAATATATTCATTCCAAATCATTTTTACACAGGGACATCAAGCCAGACAACTTCCTCATGGGTTTGGGGAGGCGTGCCAATCAAGTTTATGCCATTGACTTTGGTCTTGCTAAAAAATACAGAGACACCTCTTCCCATCAGCATATTCCTTACAGAGAGAATAAGAATTTGACAGGAACTGCTAGATATGCTAGTATGAATACACATCTTGGAATTGAGCAAAGCCGTAGGGACGACTTAGAATCACTTGGATATGTTCTTATGTACTTTTTGAGAGGAAGCCTTCCGTGGCAGGGATTGAAAGCAGGTACTAAAAAGCAGAAGTACGAGAAGATCAGCGAGAAGAAAGTTTCTACTTCTATTGAGTCCTTGTGTCGTGGCTACCCCTCAGAGTTCGCTTCGTACTTCCATTACTGTCGGTCATTGCGGTTTGATGATAAACCAGATTATGCATATTTGAAAAGGCTGTTTCGCGACCTCTTCATTCGTGAAGGATTCCAGTTTGATTATGTCTTTGATTGGACCATTTTGAAGTATCAGCAATCTCAAATTGCCACTCCTCCATCACGTGCCATTGGTTCTGGTGCTGGGCCAAGTTCTGGCATACCTCCAGCTGTTGTGACTGCTGATAGACCGACAGGTGGGGAAGAAGGTAAACATGCTGGTTGGTCTTCATCAGATCCTGCTCGTAGAAGAACCTCTGGGCCTATTGCAAATGATGGAAACTTATCTCGACAAAAAGCCCCAGTTCCAAGTGAATCAACTGCATCTAAAGAAGTTATGGTGTCCAGTTCTAGTTTGTTCCGGCCAAGTGGATCTGCAAGGCGAGTAGGTGCTGTTTCCAATAGTCGTGATGCATTAGTTGGCAGTGAGATTGAACCCTCTCTTCCTCTTGCCAGGGAAGGCAGTCCTGGAGCACTCCTTAAAACCTCTGGAGCACAAAGAAATTCACCTATCACATCATCGGAGCACAAAGGGACATCTTCTGGCAGAAACACATCGAACATAAAGAATTTTGAGTCAACTCTCCGAGGTATTGAGAGCCTGAATTTCAATGACGAGAAGGTACAGTATTAG 1425 0.4288 MEPRIGNKFRLGRKIGSGSFGEIYLGTNVQTNEEVAIKLENVKTKHPQLLYESKLYKVLQGGTGIPNVRWFGVEGEYNVLVMDLLGPSLEDLFSFCSRKLSLKTVLMLADQMINRVEYIHSKSFLHRDIKPDNFLMGLGRRANQVYAIDFGLAKKYRDTSSHQHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYEKISEKKVSTSIESLCRGYPSEFASYFHYCRSLRFDDKPDYAYLKRLFRDLFIREGFQFDYVFDWTILKYQQSQIATPPSRAIGSGAGPSSGIPPAVVTADRPTGGEEGKHAGWSSSDPARRRTSGPIANDGNLSRQKAPVPSESTASKEVMVSSSSLFRPSGSARRVGAVSNSRDALVGSEIEPSLPLAREGSPGALLKTSGAQRNSPITSSEHKGTSSGRNTSNIKNFESTLRGIESLNFNDEKVQY 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g05348 474 MobiDBLite consensus disorder prediction 343 387 - -
Tsu02g05348 474 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Tsu02g05348 474 MobiDBLite consensus disorder prediction 425 460 - -
Tsu02g05348 474 PANTHER CASEIN KINASE-RELATED 1 459 - -
Tsu02g05348 474 SUPERFAMILY Protein kinase-like (PK-like) 5 290 IPR011009 -
Tsu02g05348 474 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Tsu02g05348 474 Gene3D Transferase(Phosphotransferase) domain 1 1 308 - -
Tsu02g05348 474 MobiDBLite consensus disorder prediction 303 460 - -
Tsu02g05348 474 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g05348 474 SMART serkin_6 9 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g05348 474 Pfam Protein kinase domain 10 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g05348 474 PANTHER CASEIN KINASE 1-LIKE PROTEIN 2 1 459 IPR030509 GO:0004672|GO:0005524
Tsu02g05348 474 CDD STKc_CK1_delta_epsilon 8 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g05348 Tsu-Chr2 62054056 62059481 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g05348 7 223 EF-hand Containing Proteins AT2G17890 26.667 6.47e-14 72.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Tsu02g05348 Pkinase 1.9e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g05348 K02218 - gmx:100778165 820.076
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g05348 02 62054056 62059481 Tsu08g00525 08 5492041 5497737 PCT