Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g05345 ATGGGAAATCAGAAACAGAAGTGGACGGCGGAAGAAGAAGAAGCGTTACAAGTCGGCGTTCAAAGATACGGTGCCGGTAAATGGAAAAACATTCTCCGTGACCCTGAACTTCAACCTAAACTCATTAGTCGTTCCAACATTGATCTCAAGGATAAATGGCGGAATTTGAATGTTTTCCCTGGTCAAGCTTCTACTGCTAAAGCTAGGGCAACTCCTAAGGCTAAACCATCTGTTCCTGTTAATGCTACTCCTTCTCCTTCTCCGGTCACTGTTAATGCTGCTGCTACTCCTTCTCCGGCTACTACTCCAGCTCTGGTTAACGCTACTACTGTGCACAATGTTTCTCCTGTACCTCAAACTACTCAATTTCAGACTCCTACTCGCCGCCCTTTGCAAAATGATGACGATGCTAAAATTCAACCTAAGTACAATTCAATGATTTTTGAAGCTTTAACAACACTGAAAGATACCAATGGTTCTGACTTAAGTGCCATTGTAAGCTTCATTGAGCATAAGCACGACCTTCCTCAAAATCCAAATTTCAGAAAGACGTTAGGTTCAAAGTTAAGAAGGCTTGTCAGTCAAGGGAAACTCGAAAAGGTACAAAATGGTTACAAGATAAAGGATACCTTAATAGGGACAAAGCCAGCTGATGACACACAACCACCTGCACCAAAAGAAGAAATGGATCCACCAGTGCCACCTAAGACTTCGGCATATGATGATGCAATGAGAGAAGCTGCCGAAACTGTAGCCATCAGAATTGCTGATGCGGAGCATAAGTCATTTTTGGCTGCTGCGGCAGTCAAGGAGGTAGAAAGATATGCAAAGTTTGATGAGGAAAATGATGCAATGTTAAAGTTCGCAGAAGAGCTTTTAGAAAAATGCAAGTTTGGTGGAACGGTTCGCTTTGCTTAA 918 0.427 MGNQKQKWTAEEEEALQVGVQRYGAGKWKNILRDPELQPKLISRSNIDLKDKWRNLNVFPGQASTAKARATPKAKPSVPVNATPSPSPVTVNAAATPSPATTPALVNATTVHNVSPVPQTTQFQTPTRRPLQNDDDAKIQPKYNSMIFEALTTLKDTNGSDLSAIVSFIEHKHDLPQNPNFRKTLGSKLRRLVSQGKLEKVQNGYKIKDTLIGTKPADDTQPPAPKEEMDPPVPPKTSAYDDAMREAAETVAIRIADAEHKSFLAAAAVKEVERYAKFDEENDAMLKFAEELLEKCKFGGTVRFA 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g05345 305 SUPERFAMILY Homeodomain-like 2 172 IPR009057 -
Tsu02g05345 305 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 62 IPR017930 -
Tsu02g05345 305 MobiDBLite consensus disorder prediction 78 96 - -
Tsu02g05345 305 CDD SANT_TRF 6 57 - -
Tsu02g05345 305 MobiDBLite consensus disorder prediction 212 234 - -
Tsu02g05345 305 Gene3D - 8 83 - -
Tsu02g05345 305 PANTHER TELOMERE REPEAT-BINDING FACTOR 4-RELATED 1 303 - -
Tsu02g05345 305 MobiDBLite consensus disorder prediction 64 96 - -
Tsu02g05345 305 SMART sant 4 59 IPR001005 -
Tsu02g05345 305 MobiDBLite consensus disorder prediction 117 137 - -
Tsu02g05345 305 Pfam linker histone H1 and H5 family 140 204 IPR005818 GO:0000786|GO:0003677|GO:0006334
Tsu02g05345 305 SMART h15plus2 137 204 IPR005818 GO:0000786|GO:0003677|GO:0006334
Tsu02g05345 305 CDD H15 141 201 IPR005818 GO:0000786|GO:0003677|GO:0006334
Tsu02g05345 305 Gene3D - 136 219 IPR036388 -
Tsu02g05345 305 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Tsu02g05345 305 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 139 209 IPR005818 GO:0000786|GO:0003677|GO:0006334
Tsu02g05345 305 ProSiteProfiles Myb-like domain profile. 1 57 IPR001005 -
Tsu02g05345 305 PANTHER SINGLE MYB HISTONE 4 1 303 IPR044597 GO:0003691
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g05345 Tsu-Chr2 62038730 62043004 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g05345 1 305 Single Myb Histone (SMH) Gene Family AT1G72740 43.087 2.84e-65 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Tsu02g05345 Linker_histone 3.6e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g05345 K09422 - gmx:778177 257.684