Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g05340 ATGCCTTCAAATGAAGAACAAGGGTCCTCCATTCTTATTGCCATTGATAAAGACAGCAATAGCAAACATGCTGTAAGATGGGCTGTTGATCATCTTTTGGACAAGAACTCATCATGCACCCTCATTCACGTTAGAACCAAGTCCCTTAGTTCAAGTGAATTCGATGTTCCTAAACATGGTCGTGCACCAACTGAAGAAGAATTGCATCAACTTTTTCTTCCCTTCCGAGGATTTTGTGCTCGAAAAGGGaTCATAGCAGAGGAGTTGGTCCTGCATGACATTGATGTTTCAAGTGCACTAACTGATTACATCATTGACCACCCTTTCatcaatgttgttgttgttggtgctCCCCGCTGGAGTAATGCTATTATAAGGAGATTTAAAGATTTAGATGTGCCATCAAGCTTAATCAAGTCTCTACCAGAGACTTGCACAGTGCATATTATATCAAAAGGAAAAGTGCATAGTGTTCAAGCAACAGCTCCTTCTATTACTATTTCTAGTCCACAGCCAAATTATTTGTCCAAAGAAATAaatagAACATCATGGCGGCGCTATAGCAATGATGGTGGATACTTCGGTCAAAACAAAGATGCAAGATTATCAAGAAAATGTAAGTCCCAAAGAGAGTTTTGTCCATCAAGGAGAACACTATCGGATGAAAGCCAAGATGCATTTATATATAAAAGCAAATCTACTAAAGTATCACCAGTAATTAGGCATGTTGAAGAGGCTGTGTTGGATTCGGAAAAGGCAGAATTGAAGATTGAGAAAGGAAAACATGAAGAAGTAATAACATTAAATGTgattgaacaaaataaatatatatttaaaagatacaatattgaagaaattgaagTTGCAACAAATTACTTTGACATTGATGGCAAAATTGGTGAAGGTGGATATGGACCTGTTTTCAAAGGCGTGCTTGATAACCGTGTTGTTGCAGTTAAGGCCTTAAGACCAGACATGAGTCAAGGGGAGAGACAATTTCATCAAGAGGTCCTTGTTTTAGGCTCCATAAGACACCCCAACATTGTAATACTTTTAGGCGCGTGTCCGGAGTATGGATGCCTTGTATACGAGTACCTAGAGAATGGAAGCTTAGAAGACCGCCTTTTTCAGAAAGATAACACACCGCCAATTCCATGGAAGACTCGGTTCAAAATAGCATCAGAGATTGCCACAGGCCTTCTTTTCCTTCACCGGACGAAACCAGAACCGGTTGTACATCGTGATCTCAAGCCAGCAAACATTCTGTTAGACAGAAATAAAGTCAGCAAGATCACTGATTATGGTTTGGCAAGGCTTGTTCCACCTTCTATCGCCAACAAAACCACTCAATATCACAAGACAACTGCAGCAGGCACATTCTGCTATATCGATCCGGAGTATCAACAAACGGGACTATTAGGCGTAAAATCAGACATATATTCATTAGGTGTGATGCTGTTACAGATCATTACCGGAAAGCCTCCAATTGGCGTCGCTCATCTTGTTGAGGAGGCcattaagaataataattttgcAGAGGTTTTAGATCCGAATGTGACCGATTGGCCGGTTGAAGAAGTTGTACCATATGCTAAAATCGCTTTGAAGTGTTGTGAGATGAGAAAAAAGGATAGACCAGATCTTGCTACTGTCATTTTGCCAGAACTGATTAGACTGAGAGATCTATAA 1689 0.3848 MPSNEEQGSSILIAIDKDSNSKHAVRWAVDHLLDKNSSCTLIHVRTKSLSSSEFDVPKHGRAPTEEELHQLFLPFRGFCARKGIIAEELVLHDIDVSSALTDYIIDHPFINVVVVGAPRWSNAIIRRFKDLDVPSSLIKSLPETCTVHIISKGKVHSVQATAPSITISSPQPNYLSKEINRTSWRRYSNDGGYFGQNKDARLSRKCKSQREFCPSRRTLSDESQDAFIYKSKSTKVSPVIRHVEEAVLDSEKAELKIEKGKHEEVITLNVIEQNKYIFKRYNIEEIEVATNYFDIDGKIGEGGYGPVFKGVLDNRVVAVKALRPDMSQGERQFHQEVLVLGSIRHPNIVILLGACPEYGCLVYEYLENGSLEDRLFQKDNTPPIPWKTRFKIASEIATGLLFLHRTKPEPVVHRDLKPANILLDRNKVSKITDYGLARLVPPSIANKTTQYHKTTAAGTFCYIDPEYQQTGLLGVKSDIYSLGVMLLQIITGKPPIGVAHLVEEAIKNNNFAEVLDPNVTDWPVEEVVPYAKIALKCCEMRKKDRPDLATVILPELIRLRDL 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g05340 562 Gene3D Transferase(Phosphotransferase) domain 1 366 561 - -
Tsu02g05340 562 PANTHER OS02G0152300 PROTEIN 11 216 - -
Tsu02g05340 562 Pfam Protein kinase domain 295 549 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g05340 562 PANTHER OS02G0152300 PROTEIN 251 562 - -
Tsu02g05340 562 SUPERFAMILY Protein kinase-like (PK-like) 273 552 IPR011009 -
Tsu02g05340 562 CDD STK_N 10 153 - -
Tsu02g05340 562 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 251 562 - -
Tsu02g05340 562 Gene3D Phosphorylase Kinase; domain 1 263 365 - -
Tsu02g05340 562 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 11 216 - -
Tsu02g05340 562 Pfam Universal stress protein family 11 122 IPR006016 -
Tsu02g05340 562 ProSiteProfiles Protein kinase domain profile. 293 557 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g05340 562 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 10 121 - -
Tsu02g05340 562 ProSitePatterns Serine/Threonine protein kinases active-site signature. 411 423 IPR008271 GO:0004672|GO:0006468
Tsu02g05340 562 SMART serkin_6 293 557 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g05340 562 Gene3D - 1 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g05340 Tsu-Chr2 62001190 62004149 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g05340 251 562 Receptor kinase-like Gene Family AT5G12000 63.462 1.25e-147 437
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Tsu02g05340 Pkinase 1.4e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g05340 - - gmx:100802306 721.079
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g00563 08 6118216 6123380 Tsu02g05340 02 62001190 62004149 PCT