Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tsu02g05337 | ATGGAAGGTCGTGGAACTCGTTCCGTTGAAGAAAtttttgaggatttcaaaagcCGTAGAGCTGGAATCATCAAAGCCCTAACCACCGACGTTGAAGATTTCTACAGACAATGTGATCCTGAGAAGGAAAATTTGTGCTTATATGGATTACTTAATGAGAAATGGGAAGTGAATTTACCTGTTGAAGAAGTTCCTCCGGAGCTTCCTGAACCTGTGCTGGGCATCAACTTTGCAAGGGATGGGATGCAAGAGAAAGACTGGCTATCTTTAGTTGCTGTTCATAGTGATACATGGTTACTTTCCCTTGCATTCTACTTTGGAGCCAgattttcttttgataaaacTGACAGGAAACGTCTATTCAATTTGATTAATGAACTACCAACAGTATTTGAAATTGTTACTGGTGCAGCAAAGAAACAAGTTAAAGAGAAGTCTTCAGTCTCAAACAACAGTGGCAGCAAGTCTAAGTCCAGTTCTAAAGCGCGGGCTCCTGAAACTCAGAGCAGACTACCAAAGGCGGCATTACAGCCAAAAGATGAGGAGGAAGGACTGGAAGAgcatgaagatgatgaacatgGAGAAGCCATGTGCGGGGCTTGTGGTGATAGTAATGGTGCTGATGAGTTCTGGATCTGCTGTGACATATGTGAGAAGTGGTTCCATGGCAAATGCGTGAAGATCACTCCTGCACGCGCAGAACATATCAAGCAGTACAAGTGCCCTTCATGCAGTAGTAATAAGAGAGCTCGCTAG | 756 | 0.4101 | MEGRGTRSVEEIFEDFKSRRAGIIKALTTDVEDFYRQCDPEKENLCLYGLLNEKWEVNLPVEEVPPELPEPVLGINFARDGMQEKDWLSLVAVHSDTWLLSLAFYFGARFSFDKTDRKRLFNLINELPTVFEIVTGAAKKQVKEKSSVSNNSGSKSKSSSKARAPETQSRLPKAALQPKDEEEGLEEHEDDEHGEAMCGACGDSNGADEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSSNKRAR | 251 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tsu02g05337 | 251 | MobiDBLite | consensus disorder prediction | 142 | 191 | - | - | |
Tsu02g05337 | 251 | SMART | PHD_3 | 197 | 245 | IPR001965 | - | |
Tsu02g05337 | 251 | Pfam | PHD-finger | 197 | 246 | IPR019787 | - | |
Tsu02g05337 | 251 | PANTHER | ALFIN-LIKE TRANSCRIPTION FACTOR | 6 | 251 | - | - | |
Tsu02g05337 | 251 | CDD | PHD_AL_plant | 198 | 247 | IPR044104 | - | |
Tsu02g05337 | 251 | ProSiteProfiles | Zinc finger PHD-type profile. | 195 | 247 | IPR019787 | - | |
Tsu02g05337 | 251 | ProSitePatterns | Zinc finger PHD-type signature. | 198 | 244 | IPR019786 | - | |
Tsu02g05337 | 251 | PANTHER | CPG BINDING PROTEIN | 6 | 251 | IPR045104 | GO:0006355|GO:0042393 | |
Tsu02g05337 | 251 | MobiDBLite | consensus disorder prediction | 142 | 166 | - | - | |
Tsu02g05337 | 251 | Pfam | Alfin | 8 | 135 | IPR021998 | GO:0006355|GO:0042393 | |
Tsu02g05337 | 251 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 188 | 246 | IPR013083 | - | |
Tsu02g05337 | 251 | SUPERFAMILY | FYVE/PHD zinc finger | 184 | 245 | IPR011011 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Tsu02g05337 | Tsu-Chr2 | 61986173 | 61990491 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Tsu02g05337 | 7 | 251 | Alfin-like Transcription Factor Family | AT3G42790 | 73.061 | 1.45e-120 | 342 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | Alfin-like | Tsu02g05337 | Alfin | 9.9e-67 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tsu02g05337 | - | - | gmx:100170700 | 373.629 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Tsu08g00587 | 08 | 6366411 | 6372265 | Tsu02g05337 | 02 | 61986173 | 61990491 | ECH | |
Tsu02g05337 | 02 | 61986173 | 61990491 | Tsu02g05337 | 02 | 61986173 | 61990491 | ECH | |
Tsu02g05337 | 02 | 61986173 | 61990491 | Tsu08g00587 | 08 | 6366411 | 6372265 | PCT |