Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g05337 ATGGAAGGTCGTGGAACTCGTTCCGTTGAAGAAAtttttgaggatttcaaaagcCGTAGAGCTGGAATCATCAAAGCCCTAACCACCGACGTTGAAGATTTCTACAGACAATGTGATCCTGAGAAGGAAAATTTGTGCTTATATGGATTACTTAATGAGAAATGGGAAGTGAATTTACCTGTTGAAGAAGTTCCTCCGGAGCTTCCTGAACCTGTGCTGGGCATCAACTTTGCAAGGGATGGGATGCAAGAGAAAGACTGGCTATCTTTAGTTGCTGTTCATAGTGATACATGGTTACTTTCCCTTGCATTCTACTTTGGAGCCAgattttcttttgataaaacTGACAGGAAACGTCTATTCAATTTGATTAATGAACTACCAACAGTATTTGAAATTGTTACTGGTGCAGCAAAGAAACAAGTTAAAGAGAAGTCTTCAGTCTCAAACAACAGTGGCAGCAAGTCTAAGTCCAGTTCTAAAGCGCGGGCTCCTGAAACTCAGAGCAGACTACCAAAGGCGGCATTACAGCCAAAAGATGAGGAGGAAGGACTGGAAGAgcatgaagatgatgaacatgGAGAAGCCATGTGCGGGGCTTGTGGTGATAGTAATGGTGCTGATGAGTTCTGGATCTGCTGTGACATATGTGAGAAGTGGTTCCATGGCAAATGCGTGAAGATCACTCCTGCACGCGCAGAACATATCAAGCAGTACAAGTGCCCTTCATGCAGTAGTAATAAGAGAGCTCGCTAG 756 0.4101 MEGRGTRSVEEIFEDFKSRRAGIIKALTTDVEDFYRQCDPEKENLCLYGLLNEKWEVNLPVEEVPPELPEPVLGINFARDGMQEKDWLSLVAVHSDTWLLSLAFYFGARFSFDKTDRKRLFNLINELPTVFEIVTGAAKKQVKEKSSVSNNSGSKSKSSSKARAPETQSRLPKAALQPKDEEEGLEEHEDDEHGEAMCGACGDSNGADEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSSNKRAR 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g05337 251 MobiDBLite consensus disorder prediction 142 191 - -
Tsu02g05337 251 SMART PHD_3 197 245 IPR001965 -
Tsu02g05337 251 Pfam PHD-finger 197 246 IPR019787 -
Tsu02g05337 251 PANTHER ALFIN-LIKE TRANSCRIPTION FACTOR 6 251 - -
Tsu02g05337 251 CDD PHD_AL_plant 198 247 IPR044104 -
Tsu02g05337 251 ProSiteProfiles Zinc finger PHD-type profile. 195 247 IPR019787 -
Tsu02g05337 251 ProSitePatterns Zinc finger PHD-type signature. 198 244 IPR019786 -
Tsu02g05337 251 PANTHER CPG BINDING PROTEIN 6 251 IPR045104 GO:0006355|GO:0042393
Tsu02g05337 251 MobiDBLite consensus disorder prediction 142 166 - -
Tsu02g05337 251 Pfam Alfin 8 135 IPR021998 GO:0006355|GO:0042393
Tsu02g05337 251 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 188 246 IPR013083 -
Tsu02g05337 251 SUPERFAMILY FYVE/PHD zinc finger 184 245 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g05337 Tsu-Chr2 61986173 61990491 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g05337 7 251 Alfin-like Transcription Factor Family AT3G42790 73.061 1.45e-120 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Tsu02g05337 Alfin 9.9e-67 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g05337 - - gmx:100170700 373.629
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g00587 08 6366411 6372265 Tsu02g05337 02 61986173 61990491 ECH
Tsu02g05337 02 61986173 61990491 Tsu02g05337 02 61986173 61990491 ECH
Tsu02g05337 02 61986173 61990491 Tsu08g00587 08 6366411 6372265 PCT