Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g05336 ATGGTTCTGATCAAACCTCTTTCAGATCAGAAGGGCAGGGGCTCCAAGTCAGAGAATGCGATCccatatgaaaaaataaatgtcaacCGGTTGGCAAGTACAGGTGTGGCTACAGGCATTAAAGATGGCAGTTATGAGAGTTCTTCACATGACCGACTACTATATGTAACAACCTGTCTAATTGGGCAGCAGGTGGAAGTCCAGGTGAAAAATGGGTCTGTATACTCTGGAATATTTCATGCAACAAATACAGACAGAGATTTTGGAATCATTTTGAAAATGGCCCGCTTGACAAAGGATGCTTCATCACATGGGCAGAAGTCTGGTGCAGAATTTGTTATCAAGGCTCCTTCAAAGATTTTAATTATACCTGCCGAAGAACTTGTGCAAGTTATAGCACAGGGGGTTGCTGTTACTAGGGATGACCTACCTAGTGAACCTCAGCATGATAGGTATCAGGAAATCATGGTTGACTCATTGATATCTCAATCACATCATCCTGAGTTAGGAAGAGAACTAAAACCCTGGGTACCTGATGAAGATGATCCACAATGCCCTGAACTGGACAATATCTTTGACGGCCACTGGAATAGGTTgGGATGGGATCAGTTTGAAACAAATAAGACATTGTTTGGGGTCAAAAGCACATTCAATGAGGAGCTTTATACGACAAAGCTTGAAAAAGGGCCACGGACAAGAGAATTAGAAATGCGAGCTTTAAGAATAGCAAGAGAAATTGAGGGTGAGGATACCCGAGATCTTCACCTTGCAGAGGAAAGAGGTCTTTACTTAGATGAAGACTTTGATATTGACGAAGAAACTAGATTCTCTTCGGTCTATAGGGGTACACATGTTGATGATACATATGAGGAAAATGAAGACATACTGTTTGATTCTCACAATTCTGAAACTTTTAGTGGTATATTCGGTTCGGTCAATGAGAGGTATGGTGAAATAAATGGTGGAGAAGGCAATAATGGAGCTCATACATTGGCAAATTCTTCCTCCGTGGATTACCCACAGTCATCTCAGTCAAGTACTGGTGTAGATTTAAACCGCTCTATTGCTTATGATCATGCTAAGCAATTTCTGTCTGAAATCCCTTCCAAAAGCTACTCATCTTTGGATGGGGAAAACAGGATTCACGAGAACCTGGTTCATAATCTACACGAAGCCAGTGGTAATATCGGGGAAGAAAATCATATACATGTTCAGGATGTTCAACTGTCTAAATATGAGGATTCACCGGCATCACTCTTTTTGAAGAAAGATGACTTCGATAAAGGGATATTATCTCCTAATGCTAGCTCCTATGCCCCATCTTCTCATGTAATATCAAAATCTCATGAGAAGATGGGATTTCCCAGGGATTCTACTGAGGGTTTAGCACATGGTAAACCTAATGAGAAAACAATGTATTTAAATTCCTGTGTAGCATCATCCGGCTCAGATACTGTGAGAGGTGTGGCAGCATCTTCCGGTCCTGGTTTATCTCGAAGTTCGTCAGTTGGTTCGTTGTCTTCTGAAAAATCGTCTTTGAATCCCAATGCAAAGGAAttcaagctcaacccaaatgcAAAGAGTTTTATTCCGTCACCTACTCGGCCTCCCAGTCCGGTGTCTGATAATTCCTTCTATTTTCAACCTAATGTAACTACTGTACCAAATATGCCAGCCGTGCCCATGAGTATTGGGATTGGACCTAATTTTTCCGGGCAACAACCTATCATGTATAATCCACAGGTATCCCAAATGCCAACTCAAGcatattttcatcaaaatgcACCTCAGTACGGACAGCTTCTTGGTCATCCTAGGCAAGCTTTATACATGCCGCCGAGTTACCAACCTGAAATGCCATACAAGGGACaTTACATCTATGCTTTTTCAACCTTCATCTCTTGCCACAACACACATGCacaacaaattttgtttctaaATCTCCAAGGTAAATGGAATATTGTTCTAAGCGGTAAAAAAATGAAGTGCTTATGTGAGAAAGATTCTGCTCATTCAACATCCCACCATGTTTTTGGATGTCCATCGTGGGGGACTTCTTCTGAATCTGAAGTCCAACAAACTTCCATGTCCAAAAGTTTAAGCTTCAAAGTGGAAGCTCTGCCACAAAAGTGCCACAATAGTAAGGCGTTGAGTTTTCAATTTCAAGAACAGGATTCATCTTCAACTCAATCGTCTGGCTCATCACAATCAGGTCAAATTCCTTTACAGCACAGTTCTTCTACTGGTTCAACATTTAAGAGAACTGAGGAGAATAGTATGGGATGTCTCGTTGGGACATCATCTATTGGGACTCCAAATCTCACCATCCATCCTCCAATAGTGGAACACAACCAATCACTTGCGCATATTGCACTCCACTTTGCTGATCCATGCTACAATGGCCTACTTTCTGCTTCATATGGCCAACAATATAAGGCTTATGGCATCATGTCATCAAACTCTGACCTTCTTCATGGCCAACTAATGGAAACTGCTCCTGTCCGAATTCCCTTGCCATCTGATATGACGGAAGAACCCATATATGTGAATTCAAAGCAGTACCATGCTATTCTGAGGCGAAGACAGTGTCGAGCAAAACTTGAAGCACATAACAAACTCATCAAGGATCGTAAACCATATCTTCACGAGTCTCGCCATGTACATGCATTAAAGAGAGCTAGAGGTGCAGGTGGCCGCTTTCTCAATGCTAAAAAGCTCCAAGAATCAAAGCAAGCTTCACAAAACCATGGCCAAAATGTTTCCACCAGCTAtacttgtttgaatttgaatggaAATATGTCAGAATCTAAAACGCATGATCAAGTTGAAAACTACCGAGATGGTGGTTCTGCTTCTGGTGTCACATATGCATCAAATAAGAATGAAATGTTCCAGCAGCAACAAGAGTTAGAATTCAGGTTATGCAGTTACCCTTCTTCTCATACTGGAAGGAACATGCAAGATTATACAGCTGACAAGAGTGTTGGTGCGAATCAACGCCGATTATCGGTTCTCATGTGA 3021 0.4045 MVLIKPLSDQKGRGSKSENAIPYEKINVNRLASTGVATGIKDGSYESSSHDRLLYVTTCLIGQQVEVQVKNGSVYSGIFHATNTDRDFGIILKMARLTKDASSHGQKSGAEFVIKAPSKILIIPAEELVQVIAQGVAVTRDDLPSEPQHDRYQEIMVDSLISQSHHPELGRELKPWVPDEDDPQCPELDNIFDGHWNRLGWDQFETNKTLFGVKSTFNEELYTTKLEKGPRTRELEMRALRIAREIEGEDTRDLHLAEERGLYLDEDFDIDEETRFSSVYRGTHVDDTYEENEDILFDSHNSETFSGIFGSVNERYGEINGGEGNNGAHTLANSSSVDYPQSSQSSTGVDLNRSIAYDHAKQFLSEIPSKSYSSLDGENRIHENLVHNLHEASGNIGEENHIHVQDVQLSKYEDSPASLFLKKDDFDKGILSPNASSYAPSSHVISKSHEKMGFPRDSTEGLAHGKPNEKTMYLNSCVASSGSDTVRGVAASSGPGLSRSSSVGSLSSEKSSLNPNAKEFKLNPNAKSFIPSPTRPPSPVSDNSFYFQPNVTTVPNMPAVPMSIGIGPNFSGQQPIMYNPQVSQMPTQAYFHQNAPQYGQLLGHPRQALYMPPSYQPEMPYKGHYIYAFSTFISCHNTHAQQILFLNLQGKWNIVLSGKKMKCLCEKDSAHSTSHHVFGCPSWGTSSESEVQQTSMSKSLSFKVEALPQKCHNSKALSFQFQEQDSSSTQSSGSSQSGQIPLQHSSSTGSTFKRTEENSMGCLVGTSSIGTPNLTIHPPIVEHNQSLAHIALHFADPCYNGLLSASYGQQYKAYGIMSSNSDLLHGQLMETAPVRIPLPSDMTEEPIYVNSKQYHAILRRRQCRAKLEAHNKLIKDRKPYLHESRHVHALKRARGAGGRFLNAKKLQESKQASQNHGQNVSTSYTCLNLNGNMSESKTHDQVENYRDGGSASGVTYASNKNEMFQQQQELEFRLCSYPSSHTGRNMQDYTADKSVGANQRRLSVLM 1006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g05336 1006 MobiDBLite consensus disorder prediction 484 538 - -
Tsu02g05336 1006 MobiDBLite consensus disorder prediction 484 521 - -
Tsu02g05336 1006 Gene3D - 843 904 - -
Tsu02g05336 1006 Pfam Ataxin 2 SM domain 50 133 IPR025852 -
Tsu02g05336 1006 PANTHER ATAXIN-2 HOMOLOG 18 625 - -
Tsu02g05336 1006 SMART LsmAD_2 211 282 IPR009604 -
Tsu02g05336 1006 MobiDBLite consensus disorder prediction 726 753 - -
Tsu02g05336 1006 Gene3D - 57 127 - -
Tsu02g05336 1006 ProSiteProfiles NF-YA/HAP2 family profile. 843 903 IPR001289 GO:0003700|GO:0006355
Tsu02g05336 1006 MobiDBLite consensus disorder prediction 321 348 - -
Tsu02g05336 1006 ProSitePatterns NF-YA/HAP2 subunit signature. 848 868 IPR018362 GO:0003677|GO:0016602
Tsu02g05336 1006 Pfam LsmAD domain 211 281 IPR009604 -
Tsu02g05336 1006 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 845 900 IPR001289 GO:0003700|GO:0006355
Tsu02g05336 1006 PANTHER ATAXIN 2-RELATED 18 625 IPR045117 GO:0003723
Tsu02g05336 1006 MobiDBLite consensus disorder prediction 326 348 - -
Tsu02g05336 1006 PRINTS CCAAT-binding transcription factor subunit B signature 846 868 IPR001289 GO:0003700|GO:0006355
Tsu02g05336 1006 PRINTS CCAAT-binding transcription factor subunit B signature 877 900 IPR001289 GO:0003700|GO:0006355
Tsu02g05336 1006 SMART cbf3 842 903 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g05336 Tsu-Chr2 61968110 61982918 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g05336 670 979 CCAAT-HAP2 Transcription Factor Family AT1G17590 37.846 5.84e-47 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Tsu02g05336 SM-ATX 4e-26 CL0527
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g05336 - - gmx:100812754 843.188
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g05336 02 61968110 61982918 Tsu02g05336 02 61968110 61982918 ECH
Tsu02g05336 02 61968110 61982918 Tsu08g00588 08 6375099 6377109 PCT