Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g05329 ATGACGCGTATTGCCATAGTTAACAACGACAGATGCAAACCCACAAAGTGTCGTCAAGAGTGCAAGAAGAATTGTCCTATCGTCAAACAAGGAAAATTATGTATTGAGGTTACTTCTGCTTCCAAGATTGCTTACATATCTGAGGAACTGTGCAATGGATGCACTGTGTGTATTaagAAATGTCCTTTTGGAGCCATCGACATTATCAACTTGCCAGAGAATTTGGACAAAGATACCACTCATCGATATGGTCCTAATACCTTTAAGCTACACAGGTTGCCGGTTCCCAGGCCGGGGCAAGTGCTTGGTTTGGTTGGGAAAAATGGAATTGGGAAGTCCACTGCACTTAACGTTTTGGCTGGAAAACTGAAGCCCAACTTGGGTCGTTTCACAGAACCCCCTGATTGGCAGGAAATTTTGACCCATTTTCGAGGATCTGAATTGCAGAATTACTTTACTCGCATGCTAGAGGATGATTTGAAGGCTAGCATCAAGACTCAGTATGTTGACAACATTCCAAAAACTATGCAAGGGAACGTGGGACAGTTGCTAGACCAATACAATGAGAGAGATATGAAGGAACACCTTTGTGCTGATCTTGAGCTTAATCAAGTTTTAGATCGTAATGTTGGTGATCTTTCAGGTGGTGAGCTCCAAAGGTTTGCCATTGCAGTTGCTGCCCTTCGAAATTCAGAGATATACATGTTTGATGAACCTTCGAGTTATCTTGATGTGAAACAAAGGCTGAAAGCTGCTCAAGTTGTTCGGTCATTGCTCAGGCCTAATAGCTATGTAATTGTTGTCGAGCACGATCTTAGTATTTTGGACTACTTATCAGACTTTATCTGCTGTTTGTATGGCCAACCTGGTGTATACGGTGTTGTAACACTCCCTTTCTCAGTCAGAGAAGGAATTAATATCTTCTTGTCCGGCTTTGTTCCAACAGAAAATCTTAGGTTTCGGAATGTCTCTCTTACTTTCAAGGTTGCAGAGACTCCACAGGAAATTGCTGAGGAAGTTCAAACTTATAATCGATTCAAATACCCAACGATGACTAAAACTCAAGGCAATTTCAGGCTTCATGTAGTTGAAGGAGAATTTACAGATTCACAGATTATTGTGATGCTGGGCGAAAATGGGACAGGAAAGACAACATTCATTCGTATGCTGGCTGGTTCGTTGAAACCTGATACTATAGAAGGTGGATCTGATGTGGAGATGCCCGAGTTCAACGTATCATACAAACCTCAGAAAATTAGCCCAAAGTCCCAATTATCTGTTAAACAGTTGCTAGATCGAAAAATCCCTGATGCATATACTCATCCCCAATTTATTTCAGATGTGATGAAGCCACTACTTATAGAACAGTTGATGGACCAAGAGGTTCAGAATCTTTCTGGTGGAGAGTTGCAAAGAGTTGCCTTATGCATTTGTCTTGGGAAGGATGCAGACATCTATCTGATAGATGAGCCAAGTGCATATCTTGATTCGGAACAGCGTATTGTTGTTGCAAAAGTCATCAAGAGGTTTATTCTTCATAGAAAGAAAACAGCCTTTATTGTTGAGCATGATTTCATCATGGCAACTTATCTTGCTGACAGAGTTATCGTTTACGAGGGTCAACCTTCAATTGATTGTACTGCAAATTCTCCACAATCATTGCTTACTGGGATGAACCTTTTCTTATCTCATCTTGATATCACATTTAGAAGAGACCCAACTAATTTCCGCCCAAGGATCAACAAACTTGGATCAACAAAGGACAGAGAGCAAAAGAATGTTGGGACTTATTATTACCTTGATAACTGA 1809 0.4074 MTRIAIVNNDRCKPTKCRQECKKNCPIVKQGKLCIEVTSASKIAYISEELCNGCTVCIKKCPFGAIDIINLPENLDKDTTHRYGPNTFKLHRLPVPRPGQVLGLVGKNGIGKSTALNVLAGKLKPNLGRFTEPPDWQEILTHFRGSELQNYFTRMLEDDLKASIKTQYVDNIPKTMQGNVGQLLDQYNERDMKEHLCADLELNQVLDRNVGDLSGGELQRFAIAVAALRNSEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSILDYLSDFICCLYGQPGVYGVVTLPFSVREGINIFLSGFVPTENLRFRNVSLTFKVAETPQEIAEEVQTYNRFKYPTMTKTQGNFRLHVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGSLKPDTIEGGSDVEMPEFNVSYKPQKISPKSQLSVKQLLDRKIPDAYTHPQFISDVMKPLLIEQLMDQEVQNLSGGELQRVALCICLGKDADIYLIDEPSAYLDSEQRIVVAKVIKRFILHRKKTAFIVEHDFIMATYLADRVIVYEGQPSIDCTANSPQSLLTGMNLFLSHLDITFRRDPTNFRPRINKLGSTKDREQKNVGTYYYLDN 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g05329 602 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 340 565 IPR003439 GO:0005524
Tsu02g05329 602 Gene3D - 332 600 IPR027417 -
Tsu02g05329 602 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 1 602 IPR013283 -
Tsu02g05329 602 ProSiteProfiles 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. 42 71 IPR017896 -
Tsu02g05329 602 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 363 539 IPR027417 -
Tsu02g05329 602 Pfam Possible Fer4-like domain in RNase L inhibitor, RLI 2 33 IPR007209 -
Tsu02g05329 602 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 97 288 IPR027417 -
Tsu02g05329 602 Pfam 4Fe-4S binding domain 45 67 IPR017896 -
Tsu02g05329 602 Gene3D - 1 328 IPR027417 -
Tsu02g05329 602 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 66 311 IPR003439 GO:0005524
Tsu02g05329 602 ProSitePatterns ABC transporters family signature. 213 227 IPR017871 GO:0005524
Tsu02g05329 602 Pfam ABC transporter 362 493 IPR003439 GO:0005524
Tsu02g05329 602 SUPERFAMILY 4Fe-4S ferredoxins 3 139 - -
Tsu02g05329 602 SMART AAA_5 98 290 IPR003593 -
Tsu02g05329 602 SMART AAA_5 369 543 IPR003593 -
Tsu02g05329 602 CDD ABC_RNaseL_inhibitor_domain2 346 595 - -
Tsu02g05329 602 ProSitePatterns 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 51 62 IPR017900 -
Tsu02g05329 602 PRINTS ABC transporter family E signature 103 128 IPR013283 -
Tsu02g05329 602 PRINTS ABC transporter family E signature 48 72 IPR013283 -
Tsu02g05329 602 PRINTS ABC transporter family E signature 75 95 IPR013283 -
Tsu02g05329 602 PRINTS ABC transporter family E signature 136 152 IPR013283 -
Tsu02g05329 602 PRINTS ABC transporter family E signature 152 178 IPR013283 -
Tsu02g05329 602 PRINTS ABC transporter family E signature 20 35 IPR013283 -
Tsu02g05329 602 Pfam ABC transporter 98 240 IPR003439 GO:0005524
Tsu02g05329 602 CDD ABC_RNaseL_inhibitor_domain1 74 328 IPR034348 -
Tsu02g05329 602 ProSitePatterns ABC transporters family signature. 465 479 IPR017871 GO:0005524
Tsu02g05329 602 PANTHER - 1 602 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g05329 Tsu-Chr2 61908796 61911606 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g05329 346 523 Calmodulin-binding Proteins AT2G36910 27.778 6.41e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g05329 K06174 - gmx:100797423 1071.23