Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g05321 ATGGAATACCCTTTTTACCCTAAGGGGAGAGGAATTGGGTATTGGCAGTCTCCTGGAACTCAGTTGGAAGAATCAAGATCATTAGATGGTGGAATCAGCAATTTGGTGTCTGAGGATATGCCTAGCAGCTTCTCTGAGCTCATGAACTTTGATACTTATGCTGGTTTGTGTTCTGGCCCATCCATGACTGATCAGATTATGGCTAATGAGCTTCCGTCTCTTGCCTCAGTATTATATCAATCACCTGATGAATTCAATCTAGTAGAACAAAACACCGGACAATTCTATATGACAGGAGTCAGTGGAAATTACAATAATTCGGAAAGCTCCCCCGTTTTTGGAGAGAAAATTGTGCGTCAACAGATGGATAGCCTACTTGGTTTATTAGACAACAACAATGATGCAAATAACTTAAGTTCTAAGCAAAAATTTAACGACTCTTCGCAGCATGTTAATACTTTTGACATGGACAATTGCATAATCTCGAAGCCACCTGCTTTGTCACTTGATGAGAAAATGCTGAAAGCCCTGTCCTTCTTTAAAGAATCAGCTGGTGGGGGAATATTGGCACAAGTTTGGGTACCTATAGTGCATGGTGGTCAAGTTTTCTTAAGCACTAGTGAGCAACCTTATTTACTAGATCAAATGCTTGCAGGGTATCGTGAAGTATCAAGGACATTTACATTTTCTACAGAAGGAAAACCAGGTTTTTTACCGGGACTTCCTGGTCGTGTGTTTATCTCCAAAGTTCCTGAGTGGACTTCCAATGTTGGTTACTACAGTCCAAGTGAGTATTTGAGGGTTGAGCATGCAAGAAATCATGATGTCCGTGGATCAATTGCTTTTCCCATATTTGATCTGCAGTCTGGACTACCATGTTGTGCTGTCTTGGAACTTGTCACTACGAAGGAAAAACTTGATTTTGACAGAGAATTGGAAATTATTTGTCGTTCACTTCAGCTTGTAAATTTAAGGACTACAATGCCTTTTCGGCTGCTTCCTGAGTGTCTTTCGAATAATAAAAGAGCTGCATTAACCGAGATAGTTGATGTGTTAAGATCTGTGTGTCATGCACATAGATTGCCACTGGCACTAACATGGATTCCCTGTTTTTACACTGAGGGCACAAGAGATGAAACTACTAGAATACAAATTAAAGAGGGTAATTCAAGTTCTAGAGAAAAAAACATACTGTGTATTGAAGAATCAGCTTGCTATATAACTGATACAGCGATGGAAGGATTTGTGCATGCATGCATTGAAAATCCTCTTGAGGAAGGGAAGGGTGTAGCTGGGAAAGCACTTCAATCAAACCATCCTTTCTTCTATTCTGATGTGAAAACATATGATATTAGTGAGTATCCGCTTGTTCATCATGCACGCAAATTCAATTTGAATGCTGCAGTTGCAATCAGGCTAAGGAGTACTTATACTAATAATGATGATTACATATTGGAATTCTTTCTTCCTATCAATATGAAGGGGAGTTCAGAACAGCAACTTTTATTAGACAACCTCTCAGGTACCATGCAGAAAATTTGTAAGAGTTTGAGGACAGTTTCAGGTGCCGAACTATCAGAAATAGAAAGCTCGCAGGCAGGATTTGAAAAGAACAGTGTCCCGAGTTTCCCCCCTTCTTCTAAGAGAAAATCTCGAATACCATTTATAAATGAAAACCATGGTTCTGTCCATAAGTTGTCGTCAAAGGCTTCTAACCTGAGAAACAATGGAAATGAGCCTTCTTCTAACCAGGAAAGAAATGGACCAAGAAGGCGAGGTGAGAAAAATAGAAGTTCATCCGAGAAGAATGTTAGCTTGAGTGTTCTCCAACAATACTTTTCTGGTAGTCTGAAGGATGCTGCAAAAAGCATTGGCGTTTGCCCGACAACTCTGAAAAGGATATGCAGGCATCACGGAATTTCAAGATGGCCATCTCGCAAGATTAATAAAGTGAATCGTTCTTTGAAGAAAATTCAGACTGTGCTTGACTCTGTCGAGGGAGTTGAAGGTGGGTTGAAGTTTGATCCTTCCGTGGGGGCATTTGTTGCAAAGGGGACAGCCATCCaagaaattgatgaaaatagaaGTCTCCTTTTCCCCGAGAAAAGTACTACAGAAGACTCCGAGCCTTTCTCACAAGATGCTGCCTTAGTGCCTCCTGCACATTGTAGTGACAGTGAGAATTCAGCAAATAAGTTGAATGGAAAATTGAAGGAAATCAATGCATCTTTGATTGATTGCAGTGAAGATTCAAAATCATTTGCAATGGATGATTGTCCTGAACAAGCTTGTTTTGGTTCCGTTCTTGGAAAAGGCGATGAGTGGGTTCTGAACAAGGGTGGTTTGagggaagaagaaaaatgtaaaCATAATACTATTGGCCATAGGACAAATTCCTTTGCTGTTTATGAGATGGACACTGGTGTGGATGGGGATGACGAGGCTGTTGAGCACAACAATCCTGCTTCTTCAAGCTTGACAGGCTCGTCTAATAGCTCTGGTTCAATGGTGCATGACAGTTCATCAGGTTACCAGAACCGTGAGAACCAAAAGCAGTCCAAAAGCAAATCAATCATCGTTGATAGTGGGTCAAAAATTGTTGTGAAAGCTACTTACGGAGAAGACACCATTCGTTTCAAGTTTGATCCAGCCACAGGTTGTTTAAAACTATATGAAGAAGTTGCATCAAGGTTCAAACTGCAAAACGGGACATTCCAGCTCAAATATCTAGACGATGAAGAAGAATGGGTGATGTTAGTGAACGACTCGGATTTACAAGAGTGTTTGGAAATATTGAATGATATGGGGACACATAATGCAAGGTTTCTTGTTCGCGATACACCTTGTACTTTTGGCAGCTCTGGTAGTAGCGGTAGCTACTTGGGAGGCAGCTCATAG 2898 0.4037 MEYPFYPKGRGIGYWQSPGTQLEESRSLDGGISNLVSEDMPSSFSELMNFDTYAGLCSGPSMTDQIMANELPSLASVLYQSPDEFNLVEQNTGQFYMTGVSGNYNNSESSPVFGEKIVRQQMDSLLGLLDNNNDANNLSSKQKFNDSSQHVNTFDMDNCIISKPPALSLDEKMLKALSFFKESAGGGILAQVWVPIVHGGQVFLSTSEQPYLLDQMLAGYREVSRTFTFSTEGKPGFLPGLPGRVFISKVPEWTSNVGYYSPSEYLRVEHARNHDVRGSIAFPIFDLQSGLPCCAVLELVTTKEKLDFDRELEIICRSLQLVNLRTTMPFRLLPECLSNNKRAALTEIVDVLRSVCHAHRLPLALTWIPCFYTEGTRDETTRIQIKEGNSSSREKNILCIEESACYITDTAMEGFVHACIENPLEEGKGVAGKALQSNHPFFYSDVKTYDISEYPLVHHARKFNLNAAVAIRLRSTYTNNDDYILEFFLPINMKGSSEQQLLLDNLSGTMQKICKSLRTVSGAELSEIESSQAGFEKNSVPSFPPSSKRKSRIPFINENHGSVHKLSSKASNLRNNGNEPSSNQERNGPRRRGEKNRSSSEKNVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRHHGISRWPSRKINKVNRSLKKIQTVLDSVEGVEGGLKFDPSVGAFVAKGTAIQEIDENRSLLFPEKSTTEDSEPFSQDAALVPPAHCSDSENSANKLNGKLKEINASLIDCSEDSKSFAMDDCPEQACFGSVLGKGDEWVLNKGGLREEEKCKHNTIGHRTNSFAVYEMDTGVDGDDEAVEHNNPASSSLTGSSNSSGSMVHDSSSGYQNRENQKQSKSKSIIVDSGSKIVVKATYGEDTIRFKFDPATGCLKLYEEVASRFKLQNGTFQLKYLDDEEEWVMLVNDSDLQECLEILNDMGTHNARFLVRDTPCTFGSSGSSGSYLGGSS 965
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g05321 965 SUPERFAMILY CAD & PB1 domains 857 949 - -
Tsu02g05321 965 MobiDBLite consensus disorder prediction 810 857 - -
Tsu02g05321 965 ProSiteProfiles PB1 domain profile. 865 947 IPR000270 GO:0005515
Tsu02g05321 965 Pfam RWP-RK domain 603 651 IPR003035 -
Tsu02g05321 965 SMART PB1_new 865 947 IPR000270 GO:0005515
Tsu02g05321 965 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 5 961 - -
Tsu02g05321 965 MobiDBLite consensus disorder prediction 585 599 - -
Tsu02g05321 965 Pfam PB1 domain 867 946 IPR000270 GO:0005515
Tsu02g05321 965 PANTHER PROTEIN NLP8 5 961 IPR045012 GO:0003700
Tsu02g05321 965 MobiDBLite consensus disorder prediction 534 603 - -
Tsu02g05321 965 ProSiteProfiles RWP-RK domain profile. 585 671 IPR003035 -
Tsu02g05321 965 MobiDBLite consensus disorder prediction 561 584 - -
Tsu02g05321 965 Gene3D - 861 945 - -
Tsu02g05321 965 MobiDBLite consensus disorder prediction 818 857 - -
Tsu02g05321 965 CDD PB1_NLP 868 946 IPR034891 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g05321 Tsu-Chr2 61866072 61871353 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g05321 1 962 NLP Transcription Factor Family AT2G43500 48.463 0.0 817
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Tsu02g05321 PB1 2.1e-17 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g05321 - - gmx:100804426 1313.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g05321 02 61866072 61871353 Tsu02g05321 02 61866072 61871353 ECH
Tsu02g05321 02 61866072 61871353 Tsu02g02276 02 22983737 22988233 PCT