Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g05315 ATGTATCATAAAGAGAATCAAAATATGGAGATAAGTCCTTATAACACTTCAAAGAAAACAACAATGAAGAAGTTGAACCatcaaaacaataattttattgTTCAAGAAGCTTCAACAATAGACATGATGCATACATCATCAAGCAATCATCAAACATCTTCTGATTCAAGTGAGACATGTCATCATGATCAAGATGGTAAATGGTCTaccaaacttctcaaagagtgTGCAATAGCAATATCTAATAGAGATTCATCCAAAATCCACCATCTTCTTTGGATGTTAAATGAGTTATCTTCACCTTATGGAGATATTGATCAAAAACTAGCTTCATATTTTCTACAAGCTCTTTTTTCTAAGGCAACACAATCTGGTCAAAAGTGTTACAAAACTCTTTCATCAATTGCACACAAGAATCATTCCTTTGATTCATCAAGAAAATTGATACTCAAGTTTCAAGAGGTAAGTCCTTGGACAACTTTTGGACATGTTGCATCAAATGGTGCTATTTTAGAAGCTTTAGAAGGAGAGAAAAAACTTCACATAATTGATATTAGCAACACACTTTGTACTCAATGGCCTACTCTTCTAGAAGCTTTAGCTACAAGAAATGATGAAACACCTCACCTTAAACTCACAATTGTTGTCACAAATAATACTTCTAGTGTTGTTGTCATGAAGGAAGTTGGTCAAAGAATGGAGAAATTTGCTAGGTTAATGGGAGTACCTTTTGAATTGAATGTTATTAGTGGTTTGAAACATTTAAGGGAATTAACAAAAGAGAGATTAGGAGTTCAAGAAGATGAAGCAATAGCTTTGAATTGTGTTGGAGCATTAAGAAGAGTTGAAGTTGAAGAAAGAGAAAGTTTAATTCACTTTTTCAAATCACTTAATCCTAGAGTTGTTACATTTGTTGAGGAAGAAGGTGATTTTGTTAGTAATGATTTTGTTAAATGTTTTGAAGAGTGTCTTAAGTTTTatacaatttattttgagaTGTTGGAAGAGAGTTTTGCACCAACAAGTAATGAGAGGTTGATGTTAGAAAGGGAGTGTTCAAGAAGCATAGTTAGGGTTTTGGCTTGTGATCGCGAATTCGACGATAACGATGACGAAGAAGATGGTGGTGATGATtgtgaaaaaagagaaaaaggaacacaATGGTTTGAAAGGCTTAAGAATGAATTTTCACCTAGTGGATTTAGTGATGATGTTGTGGATGATGTCAAAGCATTGCTAAAAAGGTATCAAAGTGGTTGGTCACTTGTTGTGCCTCAAGGAGATGATAATCAAAAAGGAATTTATCTAAAATGGAAGGAGGAAGCAGTTGTTTGGGCATCAACATGGAAACCCTAG 1356 0.3223 MYHKENQNMEISPYNTSKKTTMKKLNHQNNNFIVQEASTIDMMHTSSSNHQTSSDSSETCHHDQDGKWSTKLLKECAIAISNRDSSKIHHLLWMLNELSSPYGDIDQKLASYFLQALFSKATQSGQKCYKTLSSIAHKNHSFDSSRKLILKFQEVSPWTTFGHVASNGAILEALEGEKKLHIIDISNTLCTQWPTLLEALATRNDETPHLKLTIVVTNNTSSVVVMKEVGQRMEKFARLMGVPFELNVISGLKHLRELTKERLGVQEDEAIALNCVGALRRVEVEERESLIHFFKSLNPRVVTFVEEEGDFVSNDFVKCFEECLKFYTIYFEMLEESFAPTSNERLMLERECSRSIVRVLACDREFDDNDDEEDGGDDCEKREKGTQWFERLKNEFSPSGFSDDVVDDVKALLKRYQSGWSLVVPQGDDNQKGIYLKWKEEAVVWASTWKP 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g05315 451 ProSiteProfiles GRAS family profile. 60 450 IPR005202 -
Tsu02g05315 451 PANTHER PROTEIN SHORT-ROOT-LIKE 44 450 - -
Tsu02g05315 451 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 44 450 IPR005202 -
Tsu02g05315 451 Pfam GRAS domain family 71 450 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g05315 Tsu-Chr2 61819848 61821265 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g05315 65 451 GRAS Transcription Factor Family AT4G37650 51.724 2.33e-142 416
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Tsu02g05315 GRAS 6.9e-92 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g05315 - - gmx:100818806 621.313
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g05315 02 61819848 61821265 Tsu02g05315 02 61819848 61821265 ECH
Tsu08g00658 08 7068310 7069983 Tsu02g05315 02 61819848 61821265 PCT