Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g05308 atgaaaattcaGTGTGATGTTTGTGAGAAAGCTCCAGCAACAATGATTTGTTGTGCTGATGAAGCAGCTTTGTGTGATAAATGTGACATTGAAGTTCATGCTGCTAACAAGCTTGCTAGCAAGCATCAAAGGCTTCATCTTCAATCTCTCTCTAGCAAGCTTCCTAGATGTGACATATGCCAAGATAAGGCAGCTTTCATATTTTGTGTTGAAGATAGAGCACTCTTCTGTGAGGATTGTGATGATTCTATTCATTTAGCCGGTAGTCTTTCCGCAAACCACCAGCGCTTCCTTGCGACCGGTATCCGAGTGGCCATGAGTTCTAGTTGCGCCAAAGACGACGAAAAAACTCACTTGGAACCACCTAATAGGAAGAACACAGAACAAGTTTCTCTTGAAACACCTTCTCAGCAAGTACCTGACTTTACACCCCCTTGGGGTGTTGATGACTTATTGGAGTTAGCAGATTTTGATTCCCATGACAAAAAGGGATCCATGCAATTTGGAGAGATGGAATGGTTCACTGAGGATGGTCTTTTTGGTGAAGGATTTACACAAGAAGCCATGGCTGCTGCTGAAGTGCCTCAGCTTCCAATGACTTATGCTAGCAACAATTTTTCATCACATAGAAACTCAAAGTCAAACATGTCTAACAAAAAGCCTAGAATTGAACTCATACATGATTATAattatgatgatgaagatgagttGTTCACTGTGCCTGATCTTGGATGA 735 0.4027 MKIQCDVCEKAPATMICCADEAALCDKCDIEVHAANKLASKHQRLHLQSLSSKLPRCDICQDKAAFIFCVEDRALFCEDCDDSIHLAGSLSANHQRFLATGIRVAMSSSCAKDDEKTHLEPPNRKNTEQVSLETPSQQVPDFTPPWGVDDLLELADFDSHDKKGSMQFGEMEWFTEDGLFGEGFTQEAMAAAEVPQLPMTYASNNFSSHRNSKSNMSNKKPRIELIHDYNYDDEDELFTVPDLG 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g05308 244 MobiDBLite consensus disorder prediction 113 143 - -
Tsu02g05308 244 CDD Bbox1_BBX-like 57 98 - -
Tsu02g05308 244 Pfam B-box zinc finger 53 95 IPR000315 GO:0008270
Tsu02g05308 244 MobiDBLite consensus disorder prediction 124 141 - -
Tsu02g05308 244 Gene3D Classic Zinc Finger 1 92 - -
Tsu02g05308 244 PANTHER B-BOX ZINC FINGER PROTEIN 24 1 244 - -
Tsu02g05308 244 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Tsu02g05308 244 CDD Bbox1_BBX-like 5 47 - -
Tsu02g05308 244 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 244 - -
Tsu02g05308 244 SMART bboxneu5 52 99 IPR000315 GO:0008270
Tsu02g05308 244 SMART bboxneu5 4 47 IPR000315 GO:0008270
Tsu02g05308 244 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g05308 Tsu-Chr2 61771684 61773436 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g05308 1 162 Orphan Transcription Factor Family AT1G06040 64.912 2.13e-72 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Tsu02g05308 zf-B_box 1.7e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g05308 - - vun:114183169 374.015
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g05308 02 61771684 61773436 Tsu02g05308 02 61771684 61773436 ECH
Tsu02g05308 02 61771684 61773436 Tsu02g02252 02 22544804 22547508 PCT