Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g05301 ATGGCCGCCGCAACTCAATCTCTCTCCCTCTCCAAACCCTCTCCTCTCTCTCCCCCtctcaccaccaccaccaccaccaccaccacccgCTACTTCTCTTCCTTCCTCTCCGACAACACTCCCCGAAAACCCCTTTTCATCACTTCCTCCAAAAACAACCCAATTTCAGACATCATCCTCTCCAACAAACCCAAACAAAACGACGACGACTTTTTCATCAACGACGATGATAAGCCTCGTGAAGAGTGTGGCGTTGTTGGAATCTATGGCGACTCAGAAGCTTCACGGTTATGCTATTTAGCTCTCCATGCTCTCCAACATCGTGGTCAAGAAGGTGCTGGAATCGTCACCGTTAACAACAACGTTCTTCAATCAATCACCGGTGTCGGTCTTGTTTCCGATGTGTTTAACGAATCAAAGCTCGATCAGTTACCTGGAAATTTGGCTATTGGTCATGTTCGTTATTCTACTGCTGGACAATCCATGCTGAAAAATGTTCAACCTTTTGTTGCTGGGTATCGTTTTGGTTCTGTTGGGGTTGCTCATAACGGTAATTTGGTTAATTATCGTACTTTAAGAGctaaattagaagaaaaaggtTCCATTTTTAATACTACTTCTGATACTGAAGTTGTTCTTCATTTGATTGCTACTTCAAAACATAGACCTTTTATTTTGAGAATTGTTGATGCATGTGAGAAACTTGAAGGAGCTTATTCAATTGTGTTTGTTACTGAAGATAAACTTGTTGCTGTTAGAGATCCTTTTGGGTTTAGGCCTTTGGTTATGGGTAGGAGAAGTAATGGTGCTGTTGTTTTTGCTTCTGAGACTTGTGCTCTTGATTTGATTGAAGCTACTTATGAGAGGGAAGTGTTCCCTGGTGAGGTTATTGTGGTTGATAATAATGGGATTCAATCGCTTTGTCTTATGTCTCATCCGCAGCCCAAGCAGTGTATCTTTGAGCATATTTACTTTGCTTTGCCTAATTCTGTTGTTTTTGGTAGGTCTGTTTATGAATCGCGTAGTCGATTTGGTGAGATACTTGCTACTGAGAGTCCTGTTGATTGTGATGTTGTCATAGCTGTTCCTGATTCTGGTGTTGTGGCTGCACTTGGTTATGCTGCGAAAGCCGGTGTACCTTTTCAGCAAGGGTTGATTAGGTCACACTATGTAGGAAGGACTTTCATTGAGCCGTCTCAGAAAATTAGGGACTTTGGTGTCAAGTTGAAGCTTTCCCCGGTTCGTGCTGTACTTGAAGGTAAaagggttgttgttgttgatgattcgATTGTGAGGGGAACAACATCATCTAAGATTGTGAGGTTGCTTAAAGAAGCAGGTGCTAAAGAAGTTCACATGAGAATTGCAAGTCCTCCGATTATCGGTTCTTGTTATTATGGTGTTGATACACCTAGCTCAGAGGAGTTGATATCTAATAGGATGAGTGTTGATGAAATAAGGGATTTTATTGGATCCGATTCACTTGCTTTTCTTCCAATTAACAGCTTGCATAATATGTTGGCTAATGACTCTCCTAATTTTTGTTATGCTTGTTTCTCTGGGAAATACCCTGTTGAGCCAAGAGAGCTTAAGGTTAAGAGGGTTGGTGATTTTATTGATGATGGTTTGAATGGAAGTTTGGAACAAATTGATGGTGGTTGGGTTCAAGCTAACCGAAATACGAAAGAGCCAGCCAAACAAACAGGTTTCTTCGTACAAATTGGAATCATGTCTTGGTGTACCATTGAGTCTGATCCTGGTGTATTTACAGAACTTATTCAGCAAATGCAAGTGAAAGGGGTGCAGGTTGAGGAACTGTATTCATTGGACCCTGACGCTCTCAATAGCCTTAGGCCTGTATATGggttgatttttcttttcaagtGGCGCCCAGGAGAAAAGGATGACCGTGTTGTAATCAAAGATCCCAACCCTAACTTATTTTTTGCTAGCCAGGTAATTAATAATGCTTGTGCAACCCAGGCGATCTTGTCTATTCTTATTAATTCACCGGACATTGACATCGGTCCAGAGTTGACAAAACTGAAAGAATTTACTAAGAACTTTCCGCCTGAGCTCAAAGGTTTGGCTATCAATAACAGTGAGGCTATACGTACAGCCCATAATAGCTTTGCAAGACCCGAACCTTTTGTCGCTGAAGAGCAAAAGGCTGCTGGCAAAGATGACGATGTTTACCACTTTATAAGCTATCTACCTGTTGATGGAGTATTGTACGAACTTGATGGATTGAAGGAGGGTCCTATCAGCCTTGGTCAGTGTGCTGGTGGGCAAGGTGATATGGAATGGCTTAAGATGGTGCAACCTGTGATCCAGGAACGCATTGAAAGGTATTCACAAAATGAGATAAGGTTTAATCTCCTTGCAATTGTCAAGAACAGAAAAGAGGTGTATACTTCCGAGCTGAAGGAACTTCAGAAGAGACGGGAGCGCATTTTGCAGCAGCTGTCCGCATCAAAGTCAGAAAGACTGGTGGACAATAGCAGTTTCGATGTACTGAACAATTCTCTCTCTGAGGTGAATGCTGGGATTGAAGCTGCTACTGAGAAGATCTTAATGGAggaagaaaaattcaaaaaatggaGGACAGAGAATATTCGTAGGAAACACAATTACATACCCTTTTTGTTTAACTTTCTAAAGATTCTTGCTGAGAAGAAGCAGTTGAAGCCCCTCATTGAGAAGGCCAAGCAGAAAACAAGCAGTTCTCGGTGA 2733 0.4025 MAAATQSLSLSKPSPLSPPLTTTTTTTTTRYFSSFLSDNTPRKPLFITSSKNNPISDIILSNKPKQNDDDFFINDDDKPREECGVVGIYGDSEASRLCYLALHALQHRGQEGAGIVTVNNNVLQSITGVGLVSDVFNESKLDQLPGNLAIGHVRYSTAGQSMLKNVQPFVAGYRFGSVGVAHNGNLVNYRTLRAKLEEKGSIFNTTSDTEVVLHLIATSKHRPFILRIVDACEKLEGAYSIVFVTEDKLVAVRDPFGFRPLVMGRRSNGAVVFASETCALDLIEATYEREVFPGEVIVVDNNGIQSLCLMSHPQPKQCIFEHIYFALPNSVVFGRSVYESRSRFGEILATESPVDCDVVIAVPDSGVVAALGYAAKAGVPFQQGLIRSHYVGRTFIEPSQKIRDFGVKLKLSPVRAVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASPPIIGSCYYGVDTPSSEELISNRMSVDEIRDFIGSDSLAFLPINSLHNMLANDSPNFCYACFSGKYPVEPRELKVKRVGDFIDDGLNGSLEQIDGGWVQANRNTKEPAKQTGFFVQIGIMSWCTIESDPGVFTELIQQMQVKGVQVEELYSLDPDALNSLRPVYGLIFLFKWRPGEKDDRVVIKDPNPNLFFASQVINNACATQAILSILINSPDIDIGPELTKLKEFTKNFPPELKGLAINNSEAIRTAHNSFARPEPFVAEEQKAAGKDDDVYHFISYLPVDGVLYELDGLKEGPISLGQCAGGQGDMEWLKMVQPVIQERIERYSQNEIRFNLLAIVKNRKEVYTSELKELQKRRERILQQLSASKSERLVDNSSFDVLNNSLSEVNAGIEAATEKILMEEEKFKKWRTENIRRKHNYIPFLFNFLKILAEKKQLKPLIEKAKQKTSSSR 910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g05301 910 PANTHER AMIDOPHOSPHORIBOSYLTRANSFERASE 73 555 - -
Tsu02g05301 910 SUPERFAMILY PRTase-like 318 529 IPR029057 -
Tsu02g05301 910 TIGRFAM purF: amidophosphoribosyltransferase 83 524 IPR005854 GO:0004044|GO:0009113
Tsu02g05301 910 Hamap Amidophosphoribosyltransferase [purF]. 82 523 IPR005854 GO:0004044|GO:0009113
Tsu02g05301 910 Coils Coil 794 828 - -
Tsu02g05301 910 PRINTS Ubiquitin C-terminal hydrolase (C12) family signature 616 628 IPR001578 GO:0004843|GO:0006511
Tsu02g05301 910 PRINTS Ubiquitin C-terminal hydrolase (C12) family signature 744 754 IPR001578 GO:0004843|GO:0006511
Tsu02g05301 910 PRINTS Ubiquitin C-terminal hydrolase (C12) family signature 581 598 IPR001578 GO:0004843|GO:0006511
Tsu02g05301 910 PRINTS Ubiquitin C-terminal hydrolase (C12) family signature 652 669 IPR001578 GO:0004843|GO:0006511
Tsu02g05301 910 PRINTS Ubiquitin C-terminal hydrolase (C12) family signature 728 739 IPR001578 GO:0004843|GO:0006511
Tsu02g05301 910 Pfam Glutamine amidotransferase domain 161 280 IPR017932 -
Tsu02g05301 910 PANTHER AMIDOPHOSPHORIBOSYLTRANSFERASE 2, CHLOROPLASTIC 73 555 - -
Tsu02g05301 910 CDD GPATase_N 83 333 IPR035584 -
Tsu02g05301 910 Pfam Ubiquitin carboxyl-terminal hydrolases 850 895 IPR041507 -
Tsu02g05301 910 CDD Peptidase_C12_UCH37_BAP1 579 796 - -
Tsu02g05301 910 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 83 306 IPR029055 -
Tsu02g05301 910 ProSiteProfiles Glutamine amidotransferase type 2 domain profile. 83 302 IPR017932 -
Tsu02g05301 910 CDD PRTases_typeI 345 456 IPR000836 -
Tsu02g05301 910 Pfam Phosphoribosyl transferase domain 357 452 IPR000836 -
Tsu02g05301 910 Coils Coil 850 870 - -
Tsu02g05301 910 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 83 524 IPR029055 -
Tsu02g05301 910 Gene3D - 574 800 IPR036959 GO:0004843|GO:0006511
Tsu02g05301 910 MobiDBLite consensus disorder prediction 1 24 - -
Tsu02g05301 910 Pfam Ubiquitin carboxyl-terminal hydrolase, family 1 579 782 IPR001578 GO:0004843|GO:0006511
Tsu02g05301 910 Gene3D - 801 890 - -
Tsu02g05301 910 Gene3D - 342 506 IPR029057 -
Tsu02g05301 910 SUPERFAMILY Cysteine proteinases 578 799 IPR038765 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g05301 Tsu-Chr2 61728782 61736202 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g05301 67 556 PRT Gene Family AT4G34740 84.725 0.0 857
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g05301 K00764 - gmx:100791919 928.317