Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tsu02g05280 | ATGGATTCCGAAGATGATATGCATGATGCCAACGATATTGAGTCTCTCGATGACGATTTCTACAGTGGTGAAACCGAAGATGTTCCTATGGATTACTATAGCGACTCTGATGATGATTactttgatgatggtgatgattctGACCCTGCTGAGTCTCGTCGAACAGAGCAAAGCTTTACCATATGGAAAGAATCAGATATACGGCAACGGCAGGAAGATGATATCAGTAGAGTAGCAGCAGTTCTTTCTATACCGAAGGTTGCAGCAAGCATCGTACTTCGTCATTATAGTTGGAGTGTCAGTAGTGTTAGTGATGCTTGGTTTGCTGACGAAGGTGAAGTTCGAAGAACAGTTGGTTTGTTGGAGAAGCCAGTTTACGAGAATCTTGATGCCGAAGAGCTTACTTGTGGCATCTGTTTTGAAGATTACCCTCCTTCTAAGATTCAAACAGCTTCTTGCGGCCATCCATTCTGTTTTACATGCTGGGGAGGATATATTGGGACTTCAATTAACGATGGTCCAGGATGCTTGATGCTGAGATGTCCTGATCCCGCTTGTGGTGCTGCTGTTGATCAAGATATGATTAATCTTTTAGTATCTGATGAAGATAAAGAGAAGTATGATCGTTACCTTCTTAGATCTTACATTGAAGACAATAAGAAGaCCAAGTGGTGTCCTGCTCCTGGTTGCGAACATGCTGTTAATTTTGATGCTGGAAATGGAAATTATGATGTATCTTGCCTCTGTTCATATAGCTTTTGTTGGAATTGCACCGAAGAGGCTCACCGTCCAGTGGATTGTGGCACCGTGTCAAAGTGGATTCTAAAAAACAGTGCAGAATCCGAAAACATGAACTGGATACTTGCTAACTCAAAGCCATGTCCCAAGTGCAAGAGACCGATTGAAAAAAACCAAGGGTGCATGCATATGACATGTACTCCACCTTGTAAATTCGAATTTTGCTGGCTATGCCTCGGTGCATGGACTGAACATGGTGAAAGGACCGGGGGTTTCTATGCTTGCAATCGTTATGAAGCAGCTAAACAAGAGGGGGTGTATGATGAAActgaaaaaagaagagaaatggCAAAGAATTCATTGGAGAGGTACACACATTATTATGAGCGATGGGCAAGCAACCAATCTTCAAGGCAAAAAGCTCTTGCTGATCTACAACAGATGCAAACTGTTCATATTGACAAGCTTAGTGACTCACAGTGCCAACCGGAGTCGCAGCTTAAGTTCATAACTGAGGCCTGGTTACAGATAGTTGAGTGCAGGCGGGTATTGAAGTGGAcatatgcatatggatactatTTACCCGACAATGAACATGCTAAAAAGCAGTTCTTTGAGTACTTACAAGGTGAGGCAGAATCAGGTTTGGAGAGACTTCATCAATGTGCTGAAAAGGAACTCCAAGTATTCCTCAATGGTGATGTTGGCCCATCTAAAGAATTCAATGATTTTCGCACAAAACTAGCTGGATTGACCTCTGTGACTAGAAACTACTTTGAGAATTTGGTTAGGGCATTAGAGAATGGTTTGTGTGATGTGGATAGCAATGGAGCTGCTTCTAGCAAAGCAACAAGTTCAAAAATTGCTGCAGGGAGCAGTAAGGGAAAAGGTGGAAGAGGAAAGGGGACACCTAAAGCTAGCTTGTCCAGCAGAATAACTGATGATCATTGGTCTTGTGAGCAATGTACCTATGCAAATGCCAAATCTGCCACCACATGCCAGATGTGCAATCAACAGCGTCGATGA | 1764 | 0.415 | MDSEDDMHDANDIESLDDDFYSGETEDVPMDYYSDSDDDYFDDGDDSDPAESRRTEQSFTIWKESDIRQRQEDDISRVAAVLSIPKVAASIVLRHYSWSVSSVSDAWFADEGEVRRTVGLLEKPVYENLDAEELTCGICFEDYPPSKIQTASCGHPFCFTCWGGYIGTSINDGPGCLMLRCPDPACGAAVDQDMINLLVSDEDKEKYDRYLLRSYIEDNKKTKWCPAPGCEHAVNFDAGNGNYDVSCLCSYSFCWNCTEEAHRPVDCGTVSKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGAWTEHGERTGGFYACNRYEAAKQEGVYDETEKRREMAKNSLERYTHYYERWASNQSSRQKALADLQQMQTVHIDKLSDSQCQPESQLKFITEAWLQIVECRRVLKWTYAYGYYLPDNEHAKKQFFEYLQGEAESGLERLHQCAEKELQVFLNGDVGPSKEFNDFRTKLAGLTSVTRNYFENLVRALENGLCDVDSNGAASSKATSSKIAAGSSKGKGGRGKGTPKASLSSRITDDHWSCEQCTYANAKSATTCQMCNQQRR | 587 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tsu02g05280 | 587 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 15 | 535 | IPR031127 | GO:0004842|GO:0016567 | |
| Tsu02g05280 | 587 | SMART | ibrneu5 | 280 | 341 | IPR002867 | - | |
| Tsu02g05280 | 587 | SMART | ibrneu5 | 205 | 267 | IPR002867 | - | |
| Tsu02g05280 | 587 | SMART | zf_4 | 561 | 585 | IPR001876 | - | |
| Tsu02g05280 | 587 | MobiDBLite | consensus disorder prediction | 523 | 537 | - | - | |
| Tsu02g05280 | 587 | ProSiteProfiles | Zinc finger RanBP2 type profile. | 559 | 587 | IPR001876 | - | |
| Tsu02g05280 | 587 | ProSiteProfiles | Zinc finger RING-type profile. | 136 | 180 | IPR001841 | - | |
| Tsu02g05280 | 587 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 130 | 218 | IPR013083 | - | |
| Tsu02g05280 | 587 | ProSitePatterns | Zinc finger RanBP2-type signature. | 563 | 582 | IPR001876 | - | |
| Tsu02g05280 | 587 | PANTHER | RBR-TYPE E3 UBIQUITIN TRANSFERASE | 15 | 535 | - | - | |
| Tsu02g05280 | 587 | MobiDBLite | consensus disorder prediction | 523 | 555 | - | - | |
| Tsu02g05280 | 587 | SUPERFAMILY | RING/U-box | 131 | 217 | - | - | |
| Tsu02g05280 | 587 | MobiDBLite | consensus disorder prediction | 1 | 56 | - | - | |
| Tsu02g05280 | 587 | SUPERFAMILY | Ran binding protein zinc finger-like | 560 | 586 | IPR036443 | - | |
| Tsu02g05280 | 587 | MobiDBLite | consensus disorder prediction | 1 | 46 | - | - | |
| Tsu02g05280 | 587 | Gene3D | - | 557 | 587 | - | - | |
| Tsu02g05280 | 587 | SUPERFAMILY | RING/U-box | 286 | 334 | - | - | |
| Tsu02g05280 | 587 | Pfam | IBR domain, a half RING-finger domain | 284 | 331 | IPR002867 | - | |
| Tsu02g05280 | 587 | Pfam | IBR domain, a half RING-finger domain | 205 | 267 | IPR002867 | - | |
| Tsu02g05280 | 587 | CDD | RING-HC_RBR_TRIAD1_like | 136 | 186 | - | - | |
| Tsu02g05280 | 587 | Pfam | Ariadne domain | 354 | 518 | IPR045840 | - | |
| Tsu02g05280 | 587 | Gene3D | - | 263 | 519 | - | - | |
| Tsu02g05280 | 587 | SUPERFAMILY | RING/U-box | 205 | 274 | - | - | |
| Tsu02g05280 | 587 | ProSiteProfiles | TRIAD supradomain profile. | 132 | 345 | IPR044066 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Tsu02g05280 | Tsu-Chr2 | 61621374 | 61628776 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Tsu02g05280 | 17 | 586 | ARIADNE family | AT1G65430 | 69.363 | 0.0 | 812 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tsu02g05280 | K11968 | - | gmx:100810427 | 1048.88 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Tsu02g05280 | 02 | 61621374 | 61628776 | Tsu02g05280 | 02 | 61621374 | 61628776 | ECH | |
| Tsu02g05280 | 02 | 61621374 | 61628776 | Tsu02g02228 | 02 | 22318570 | 22325345 | PCT |