Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g05264 ATGGAGTCAGatcttcatcaacaacaacaacaaccacaggTAAATTCAACAGGTTTAACACGTTTCAAATCAGCACCAAGTTCATATTTCAACAACATAATTGATAGAGAATTTTATGAACATGTTTTCAATCGACCTTCAAGTCCAGAAACAGAACGAGTTTTTTCAAGGTTTATGAATAGTTTAGGTTCAGAAGAAGATTTACTCACTCCAAAAATTTCAGCTGAATCTAGTGTTAAAGAAGAACAAGTTATGGCTTCAATCAACAATGAACAAGTGGTTCATCAACAgagtaatattaatattaatactaattataataataactcTGTTGTTACTTCTCATGGTTTTTATCAAAGTTCAGTTATGCCACCTTTGCCAAATCAAAATGTTTCTTCTGGTTTGGATGGAAATTTTTCAATGGGAGTTAATAGGTTGCAGCAAGTGAAGAATCATGGTGGAAATAATTCTAATCTTATTAGACATAGTAGTTCACCAGCTggattattttctcaaattaacATTGAAAATGGTTATGTTAGTATGAGAGGAATGGGAACATTAGGAGCTGTTAATAACTCTataaaagaatcaaaattttCTAATGCAAGGAGTTTGAAGAATTCAACTAACTATTCATCAGGGATAATGTCAACAATAGCTGAAATTGGTGACAAAGataatagagaaaataatcAAGAAAGTGAAGCTTTTGGTGAAAGTCATGGTAATGAATATATGGATTATCAAGTTGATACTTGGGATGATTCTGAAATGATGTCTGAAAATGTTGGTGGTTTAAAAAGATTTAGAGATAATGATTCAAAACAACATTTTTCTGGTTTAAATGCAGCTGCACTTCAGAATGAAACAGGAGGAGGACATTCTTCATCTCCTTTAGCTCATCAATTGAGTATGCCAAATACTTCATCTGAAATGGCAGCTATGGAGAATTTTTTGCATTTCTCAGATTCTGTTCCGATGAAAATTCGTGCTAAGCGAGGTTGTGCTACTCACCCAAGAAGCATAGCAGAAAGgGTTAGAAGGACTAAAATTAGTGAACGTATGAGGAAGCTACAAGATCTTGTCCCAAACATGGATAAGCAAACAAACACAGCAGATATGTTGGACTTGGCTGTAGATTACATCAAAGACCTTCAAAAGCAAGCTGAGAAGCTTCAAGATTGTCAAGCAAAGTGTACCTGTCCACACAAGCAACAACAATAA 1227 0.3162 MESDLHQQQQQPQVNSTGLTRFKSAPSSYFNNIIDREFYEHVFNRPSSPETERVFSRFMNSLGSEEDLLTPKISAESSVKEEQVMASINNEQVVHQQSNININTNYNNNSVVTSHGFYQSSVMPPLPNQNVSSGLDGNFSMGVNRLQQVKNHGGNNSNLIRHSSSPAGLFSQINIENGYVSMRGMGTLGAVNNSIKESKFSNARSLKNSTNYSSGIMSTIAEIGDKDNRENNQESEAFGESHGNEYMDYQVDTWDDSEMMSENVGGLKRFRDNDSKQHFSGLNAAALQNETGGGHSSSPLAHQLSMPNTSSEMAAMENFLHFSDSVPMKIRAKRGCATHPRSIAERVRRTKISERMRKLQDLVPNMDKQTNTADMLDLAVDYIKDLQKQAEKLQDCQAKCTCPHKQQQ 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g05264 408 Gene3D - 337 407 IPR036638 GO:0046983
Tsu02g05264 408 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 7 405 - -
Tsu02g05264 408 Pfam Helix-loop-helix DNA-binding domain 341 387 IPR011598 GO:0046983
Tsu02g05264 408 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 7 405 - -
Tsu02g05264 408 SMART finulus 342 392 IPR011598 GO:0046983
Tsu02g05264 408 MobiDBLite consensus disorder prediction 1 21 - -
Tsu02g05264 408 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 336 386 IPR011598 GO:0046983
Tsu02g05264 408 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 339 400 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g05264 Tsu-Chr2 61474135 61477777 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g05264 5 402 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51140 39.163 2.18e-69 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tsu02g05264 HLH 5.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g05264 - - gmx:100805812 519.235