Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g05259 ATGAACACAAATAACTGGCTTTCATTTCCACTTTCTCCAACTCATCCTTCTTCAATACCACCTCATCTTCAACCAACTCAATCTCAATAtcatcacttttctcttggaaCATTAGTCAATGACAACATGTTGGAAACCCCTTTCCAAAATCAtgATTGGAACCTAATGAATACTAGTCACAGTCAGAGCAGCAATGAAGTTCCAAAGGTTGCTGATTTTCTTGGTGTGAGTAGCAAGATCAGTACTGAAAATGAGTCAGATCTTGCAGCCTTTGATCATTCTTCAGATAATAATTACCTAATCATGCCACCACTACATGATAACTCAGTTATAACAACTTCTAGCAACAGTTATGATCAATATCAAGAAAATGGAAACAATAATCTGCAAGCATTGACATTATCAATGGGAAGTGGTACTACTACTAAGGATTCCATATGTGAAACCAGTGGTGACACTAATAGTACAGTTGAAGCAGCTGCTACACCTAAAAGAGCTTTGGATACCTTTGGCCAAAGAACATCTATATATCGAGGCGTAACAAGACATAGATGGACTGGAAGGTATGAAGCTCATCTTTGGGATAATACATGTAGAAGGGAAGGACAATCAAGAAAAGGTCGACAAGGTGGATATGACAAAGAAGAGAAAGCAGCAAGGGCTTATGATTTAGCTGCACTAAAGTATTGGGGTACATCCACCACTACAAATTTTCCAATCAGTAACTATGAGAAGGAAGTTGAAGATATGAAGCACATGACTAGACTAGAATTTGTTGCCGCCATAAGAAGAAAGAGCAGTGGATTTTCAAGGGGTGCATCAATGTATCGTGGAGTCACAAGGCATCACCAACATGGAAGATGGCAAGCAAGAATTGGCAGAGTAGCAGGAAACAAAGATCTCTACTTAGGAACTTTCGgtACTGAAGAAGAAGCTGCAGAAGCTTATGACATAGCTGCAATTAAGTTCAGAGGATTAAATGCAGTAACAAACTTCGACATGAATCGTTACGACGTGAAAGCCATTCTTGAAAGTAATTCTCTTCCAATAGGAGGAGGTGCTGCAAAACGGTTAAAAGAAGCTCAAGCTCTAGAATGTTCTAGAAAAAGAGAACAAGAGATACTAGCATTAGGTTCTAGTACTACTTTTCAATATGGAGGAATAGGAGAAGGATCTTCAAGTTCATCAAGTAGGATGCAATTACAAGGTTACCCTTTAGTGCAATTTGAGCCTTTATATGAGAATAGTATTCAAGATACGTCGTCGTTTAATCAACAGAGTTATATTCAAACTCAGCTTCAGTTGCATCAACAACAGCAAAGTGGTggattttataattataatgggAATTATAATATTCAGAATCAGCAGGGTTTGATGAATATGGGGGTGATGGAGAATAATGGTGGTGATGGAGGGTATATTGGGAATAATATTAATGTAGGTGGAAGTGGAGGGGAGGAGGTTGGGTTTGTTAAGGTTGATTATGACATGGCTTCCGGAGGATATGGAGGTTGGTCCGCGGCGGATGCTTCAAATACTGGTGCAGCTGGTGTTTTTACAATGTGGAATGATTTGACTAATTAA 1587 0.38 MNTNNWLSFPLSPTHPSSIPPHLQPTQSQYHHFSLGTLVNDNMLETPFQNHDWNLMNTSHSQSSNEVPKVADFLGVSSKISTENESDLAAFDHSSDNNYLIMPPLHDNSVITTSSNSYDQYQENGNNNLQALTLSMGSGTTTKDSICETSGDTNSTVEAAATPKRALDTFGQRTSIYRGVTRHRWTGRYEAHLWDNTCRREGQSRKGRQGGYDKEEKAARAYDLAALKYWGTSTTTNFPISNYEKEVEDMKHMTRLEFVAAIRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFGTEEEAAEAYDIAAIKFRGLNAVTNFDMNRYDVKAILESNSLPIGGGAAKRLKEAQALECSRKREQEILALGSSTTFQYGGIGEGSSSSSSRMQLQGYPLVQFEPLYENSIQDTSSFNQQSYIQTQLQLHQQQQSGGFYNYNGNYNIQNQQGLMNMGVMENNGGDGGYIGNNINVGGSGGEEVGFVKVDYDMASGGYGGWSAADASNTGAAGVFTMWNDLTN 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g05259 528 ProSiteProfiles AP2/ERF domain profile. 176 239 IPR001471 GO:0003700|GO:0006355
Tsu02g05259 528 CDD AP2 175 241 IPR001471 GO:0003700|GO:0006355
Tsu02g05259 528 SUPERFAMILY DNA-binding domain 175 241 IPR016177 GO:0003677
Tsu02g05259 528 ProSiteProfiles AP2/ERF domain profile. 275 333 IPR001471 GO:0003700|GO:0006355
Tsu02g05259 528 CDD AP2 274 333 IPR001471 GO:0003700|GO:0006355
Tsu02g05259 528 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 5 523 - -
Tsu02g05259 528 PRINTS Ethylene responsive element binding protein signature 315 335 IPR001471 GO:0003700|GO:0006355
Tsu02g05259 528 PRINTS Ethylene responsive element binding protein signature 177 188 IPR001471 GO:0003700|GO:0006355
Tsu02g05259 528 SMART rav1_2 275 339 IPR001471 GO:0003700|GO:0006355
Tsu02g05259 528 SMART rav1_2 176 245 IPR001471 GO:0003700|GO:0006355
Tsu02g05259 528 MobiDBLite consensus disorder prediction 1 24 - -
Tsu02g05259 528 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR PLT2 5 523 - -
Tsu02g05259 528 Pfam AP2 domain 176 231 IPR001471 GO:0003700|GO:0006355
Tsu02g05259 528 Pfam AP2 domain 276 325 IPR001471 GO:0003700|GO:0006355
Tsu02g05259 528 SUPERFAMILY DNA-binding domain 274 334 IPR016177 GO:0003677
Tsu02g05259 528 Gene3D AP2/ERF domain 176 241 IPR036955 GO:0003700|GO:0006355
Tsu02g05259 528 Gene3D AP2/ERF domain 275 335 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g05259 Tsu-Chr2 61406913 61409942 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g05259 1 525 AP2-EREBP Transcription Factor Family AT3G20840 58.418 0.0 580
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Tsu02g05259 AP2 2.2e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g05259 K09285 - gmx:100788471 619.002