Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g05254 atgagtACTCATCCCTACTTCTCCAATAATAACTTCAATggttataataattattttgacCTAAATAACCCTCCATTCTATAATTTTCCTTCTAGTTACCATCAAAACAACATATCTTTTACATCTTCTCCTTCATCTCCACCTCAAAGACAAGCTCTTCCTTTACTTAACCTAAGCCCTACAAAACATGAAGATCTTCTTCTTCAAGAATCTTCCTTTAGTTGTTCTTCCATGGAAATAATGAATatgaaagagaaagaacaaCAACTAAGCATATCATCAAATTCtttagatgatgatgatgctgtGACTGTTGCTTTACATTTAGGGCTTCCAAGTATAAGCTCAGCtgatttagcttcttcaaacaTGTATGTTGATTCAGAGAAAGATGATGAAAAAGTTGTAACTCTTGCTGATTCTGAGTGTCCACTGAATAAAATTAATAGGGGTCAGTATTGGATCCCTACCCCTGCTCAGATTCTGATTGGTCCAACACAATTTTCATGCCCTCTTTGTTTCAAAACCTTCAATAGATACAACAACATGCagATGCATATGTGGGGGCATGGATCACAATATAGAAAAGGACCAGAATCACTAAGAGGAACACAACCAACAGCAATGCTAAGACTCCCATGTTTTTGTTGTGCACCTGGATGCAAGAACAACATTGATCATCCAAGAGCAAAACCACTAAAAGATTTTAGAACACTTCAAACACATTACAAAAGAAAGCATGGAATAAAACCATTTATGTGTAGAAAATGTTGCAAAGCATTTGCAGTGAGAGGTGATTGGAGAACTCATGAGAAAAATTGTGGCAAACTTTGGTATTGTAGTTGTGGGTCTGATTTTAAGCACAAAAGATCATTAAAAGATCATATCAAAGCTTTTGGAAATGGACATAAAGCTTATGGAATTGATGAATGTCTTGATCAAGATGATGAACATGGTGGCTCTGAAATTGAGCAAGAAAATGAATCTTTTCAGTCATAG 999 0.3283 MSTHPYFSNNNFNGYNNYFDLNNPPFYNFPSSYHQNNISFTSSPSSPPQRQALPLLNLSPTKHEDLLLQESSFSCSSMEIMNMKEKEQQLSISSNSLDDDDAVTVALHLGLPSISSADLASSNMYVDSEKDDEKVVTLADSECPLNKINRGQYWIPTPAQILIGPTQFSCPLCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTAMLRLPCFCCAPGCKNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCCKAFAVRGDWRTHEKNCGKLWYCSCGSDFKHKRSLKDHIKAFGNGHKAYGIDECLDQDDEHGGSEIEQENESFQS 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g05254 332 PANTHER TESTA 1 PROTEIN, PUTATIVE-RELATED 33 331 - -
Tsu02g05254 332 SUPERFAMILY beta-beta-alpha zinc fingers 234 272 IPR036236 -
Tsu02g05254 332 PANTHER ZINC FINGER PROTEIN WIP2 33 331 IPR043584 GO:0003700|GO:0010468
Tsu02g05254 332 Gene3D Classic Zinc Finger 211 300 - -
Tsu02g05254 332 ProSitePatterns Zinc finger C2H2 type domain signature. 170 190 IPR013087 -
Tsu02g05254 332 Gene3D Classic Zinc Finger 167 190 - -
Tsu02g05254 332 ProSiteProfiles Zinc finger C2H2 type domain profile. 168 195 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g05254 Tsu-Chr2 61375008 61377877 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g05254 50 332 C2H2 Transcription Factor Family AT3G57670 61.920 1.49e-130 376
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tsu02g05254 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g05254 - - gmx:100789416 485.337