Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g05246 ATGGCTGCAGCAGCGGCTTCATTCGGTAGAAATACTACTGTTGCGACAGCAAATGCAACTGATATTCAGTACTACGGCCGTCCAAGAAACTTGCATCAGATGCTACCTCGTCCTCCCTGCTCAAATCATAGGACCCCTTTTCAAAGACATACACATCCTCCTGTTATGCCAGGTCAAAGAATCATCACAAACAACCCTTTACATTTTCCTCCAACCGGCGGCCCACGTGCTCCTCAGCCCCAGATGCGACCTCGTCCCAATTCTTTTGTGTCAAGCCAACAGTCATCTGTTGGATATTATTCTAATTTGATTAATTCACTCATCGCCCAAGGTGTAATCTCATTGACTAATCAAGCCCCTAAAGAGGTAACTAAATCTATTGGCATTGAGTTTGATCCTGATATTCTGAAGGTTCGCCATGAATCTGTAATCAGTGCCTTATATGGTGATATACCTAGACAGTGCACAACTTGTGGCCTACGATTTAAATCCCAAGATGAGCACAGCCGTCACATGGATTGGCATGTGACTAAGAACCGTAATAATATGTCTAAAAACCGTAAGCAGAAACCCTCTCGCAAGTGGTTTGTTAGTGAGACGATGTGGCTTAGTGGTGCAGAGGCATTGGGAATTGAATCAGCTCCAGCTCCAGGTTTTTTGCCAGCTgaggaaaagaaagaagatgaaggGTTTGTAGTTCCTGCTGAAGAGGACCAGAGTACATGTGCATTATGTCGAGAGCCTTTCGATGTGTTTTACAGTGATGAGACAGAGGAGTGGATGTATAGAGGAGGTGTTTACCTTAACGCGCCTAATGGAATAATAACAGCCGGCATGGACAGATCACAGTTAGGCCCCATTATTCATGCTAAATGCAGATCTGAATCTACTACCTCCTCATCTCAAAGAAAACGTATGCAGCAAGGCAcatatgaagaagaagaaggcaATCAAACAAAACGAATGCGGGGATTCATTTCTTTGTAG 987 0.4245 MAAAAASFGRNTTVATANATDIQYYGRPRNLHQMLPRPPCSNHRTPFQRHTHPPVMPGQRIITNNPLHFPPTGGPRAPQPQMRPRPNSFVSSQQSSVGYYSNLINSLIAQGVISLTNQAPKEVTKSIGIEFDPDILKVRHESVISALYGDIPRQCTTCGLRFKSQDEHSRHMDWHVTKNRNNMSKNRKQKPSRKWFVSETMWLSGAEALGIESAPAPGFLPAEEKKEDEGFVVPAEEDQSTCALCREPFDVFYSDETEEWMYRGGVYLNAPNGIITAGMDRSQLGPIIHAKCRSESTTSSSQRKRMQQGTYEEEEGNQTKRMRGFISL 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g05246 328 MobiDBLite consensus disorder prediction 292 306 - -
Tsu02g05246 328 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 65 298 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Tsu02g05246 328 MobiDBLite consensus disorder prediction 292 328 - -
Tsu02g05246 328 MobiDBLite consensus disorder prediction 69 92 - -
Tsu02g05246 328 PANTHER POLYADENYLATION AND CLEAVAGE FACTOR HOMOLOG 4 65 298 - -
Tsu02g05246 328 ProSitePatterns Zinc finger C2H2 type domain signature. 155 175 IPR013087 -
Tsu02g05246 328 MobiDBLite consensus disorder prediction 30 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g05246 Tsu-Chr2 61314825 61315811 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g05246 57 323 C2H2 Transcription Factor Family AT4G04885 56.429 1.49e-94 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tsu02g05246 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g05246 K14400 - gmx:100787354 333.954