Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g05244 ATGGATTGGCATGTCACTAAGACCCGTAACCGTAGTATGTGTAAAAACCGTAAGCAGCAGAAACCCTCTCGCAAGTGGTTTGTTGGTGCGACGATGTGGCTTAGTGGTGCAGAGGCATTGGGAACTGAATCAGTTCCGTGCGTCATGAACTCTGAAGAAGAGGAGTTTGATTGGGAAAAACTGCGTCCAACTGCAGAAAAGCTTGTTACTGTTGCAACAAGTGCAACTTCTTCTATGTCAAGAATGTTTCCTGGTCTCGCGCCTAATATTGAGTACCATCCACCAGTCTTGTCGCAAACTTTTGAAAATGTGCATGCTACTCGTCCTCTCTGCTCAAATCCTATTGAAAATGTGCATCCTCATTGTCCTCCCTGCTTAAATCCTATTATATTTCCATTGAAGAATGCTATTAGGAACCCATCTGAATCAATAAATGCTAATAGTTATCGGACCCCTTTTCAAAGACATGCACATCCTGTTATGCCAGGTGTAATCTCATTGGCTAATCAAGCCAGTAAACAGGTAACTAAATCTATTGGCACTGAGTTTGATCCCGATATTCTGAAGGTTCACCATGAATCTGTAATCAGTGCCTTATATGGTGATATACCTAGACAGTGCACAACTTGTGGCCTACAATTTAAATCCCAAGATGAGCACAACAGTCATATGGATTGGCATGCCACTAAGAACCGTAACCGTAGTATGTCTAAAAACGGTAAGCAGCAGTCATATGGATTGGCATGTcacacttga 756 0.4193 MDWHVTKTRNRSMCKNRKQQKPSRKWFVGATMWLSGAEALGTESVPCVMNSEEEEFDWEKLRPTAEKLVTVATSATSSMSRMFPGLAPNIEYHPPVLSQTFENVHATRPLCSNPIENVHPHCPPCLNPIIFPLKNAIRNPSESINANSYRTPFQRHAHPVMPGVISLANQASKQVTKSIGTEFDPDILKVHHESVISALYGDIPRQCTTCGLQFKSQDEHNSHMDWHATKNRNRSMSKNGKQQSYGLACHT 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g05244 251 MobiDBLite consensus disorder prediction 1 20 - -
Tsu02g05244 251 MobiDBLite consensus disorder prediction 232 251 - -
Tsu02g05244 251 PANTHER POLYADENYLATION AND CLEAVAGE FACTOR HOMOLOG 4 49 243 - -
Tsu02g05244 251 ProSitePatterns Zinc finger C2H2 type domain signature. 207 227 IPR013087 -
Tsu02g05244 251 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 49 243 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Tsu02g05244 251 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 1 48 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Tsu02g05244 251 MobiDBLite consensus disorder prediction 233 251 - -
Tsu02g05244 251 PANTHER POLYADENYLATION AND CLEAVAGE FACTOR HOMOLOG 4 1 48 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g05244 Tsu-Chr2 61297271 61301924 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g05244 1 72 C2H2 Transcription Factor Family AT4G04885 53.333 8.23e-15 72.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tsu02g05244 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g05244 K14400 - gmx:100794796 117.857