Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g05242 ATGGCTGCAGCGGCTTCGTACCGTCTTTGGCAGTACACTGAAGAGGTTGAATTTGATTGGAAAGATATGATTCAAACTCCAGTAGACTATAGCAAAAGAAACTTGCATCATCAGTTACCATATAGGAACCCTTTGCAAGGACCTGCACGCACTGTTATGCCATTCCCTCTGCAATTTCCTCCAGCCGGAAGCCCACATGCTCCTCCGCCTCAGATGCTACCTCATCCGAATTCTATTAGTCATGCACGCCCCTTTATACCAAGCCAAAGAATCACAAACAACGCTTTGCAATTTCCTCCAGCCGGCGGCCCACATGCTCCTCCGCCCCAGATGCTACCTCCCAATCCTATTAGTCAGCCATATGTTTCTACTAGTCCTTTTGTGTCAAGCCAAGGATATTATTCTAATTTGATTAATTCACTCATGGCCCAAGGTGTAATCTCATTGGCTAATCAAGCCCCTAAACAGGTAACTAAATCTATTGGCACTGAGTTTGATCCCGATATTCTGAAGGTTCGCCATGAATATGTAATCGGTGCCTTATATGGTGATTTACCTAGACAGTGCAAAACTTGTGGCCTACGATTTAAATCCCAAGATGAGCACAGCCGTCACATGGATTGGCATGTCACTAAGAACCGTAGCCGTAGTATGTCTAAAAACTGTAAGCAGCAGAAACCCTCTCGCAAGTGGTTTGTTAGTGAGACGATGTGGCTTAGTGGTGCAGAGGCATTGGGAATTGAATCAGCTCCAGCTCCAGGTTTTTTGCCAACTgaggaaaagaaagaagatgaagagttGGCAGTTCCTGCTGAAGAGGACCAGAGTACATGTGCATTATGTCGAGAGCCTTTCGATGAGTTTTACAGCGATGAGACAGAGGAGTGGATGTATAGAGGAGGTGTTTACCTTAACGCGCCTAATGGAATAATAACAGCTGGCATCGACAGGTCACAGTTAGGCCCTATTATTCATGCTAAATGCAGATCTGAATCTACTACCTCCTCATCTCAAAGAAAACGTATGCAGCAAGGCACATATGAAGAAGGAGGCAATCAAACAAAACGAATGCGGGGATTCATTTCTTTTTAG 1092 0.4405 MAAAASYRLWQYTEEVEFDWKDMIQTPVDYSKRNLHHQLPYRNPLQGPARTVMPFPLQFPPAGSPHAPPPQMLPHPNSISHARPFIPSQRITNNALQFPPAGGPHAPPPQMLPPNPISQPYVSTSPFVSSQGYYSNLINSLMAQGVISLANQAPKQVTKSIGTEFDPDILKVRHEYVIGALYGDLPRQCKTCGLRFKSQDEHSRHMDWHVTKNRSRSMSKNCKQQKPSRKWFVSETMWLSGAEALGIESAPAPGFLPTEEKKEDEELAVPAEEDQSTCALCREPFDEFYSDETEEWMYRGGVYLNAPNGIITAGIDRSQLGPIIHAKCRSESTTSSSQRKRMQQGTYEEGGNQTKRMRGFISF 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g05242 363 MobiDBLite consensus disorder prediction 328 353 - -
Tsu02g05242 363 MobiDBLite consensus disorder prediction 328 351 - -
Tsu02g05242 363 ProSitePatterns Zinc finger C2H2 type domain signature. 189 209 IPR013087 -
Tsu02g05242 363 MobiDBLite consensus disorder prediction 101 118 - -
Tsu02g05242 363 PANTHER POLYADENYLATION AND CLEAVAGE FACTOR HOMOLOG 4 9 334 - -
Tsu02g05242 363 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 9 334 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Tsu02g05242 363 MobiDBLite consensus disorder prediction 94 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g05242 Tsu-Chr2 61283623 61284714 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g05242 132 343 C2H2 Transcription Factor Family AT4G04885 66.210 2.21e-90 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tsu02g05242 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g05242 K14400 - gmx:100794796 337.806