Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g05239 ATGGCAACAACCTATCACCAACCAGCTTCAATAGAAGAAGTACGAACCTTATGGATTGGCGATTTACAATATTGGGTAGACGAAAACTACCTAACTCACTGTTTCTCACACACCGGCGAAGTTATTTCAATCAAAATCATCCGTAACAAAATCACCGGTCAACCTGAAGGTTACGGTTTCGTCGAATTCGTTTCACATGCCGCTGCAGAAAGAGTTCTTCAAAGTTACAATGGAACTCAAATGCCAGGTACTGAACAAACTTTCCGATTAAATTGGGCTTCATTCGGTATCGGTGAACGTCGTCCTGATGCCGGTCCTGATCATTCGATTTTTGTTGGAGATCTTGCTCCTGATGTAACGGATTATTTGTTACAAGAAACTTTTAGAACTCATTATAGTTCTGTTCGTGGTGCTAAAGTTGTTACGGATCCTAATACTGGTCGTAGTAAGGGCTATGGTTTTGTTAAATTTGCTGATGAGAGTGAACGGAATCGCGCTATGTCGGAGATGAATGGTGTTTATTGTTCTACTAGACCTATGAGGATTAGTGCTGCTACACCTAAGAAGACTACTGCTTATCAGCAGAATCCTTATGCTGCTGTTGCTGTTGCTACTGCTGTTGTTGCTCCTGCACCTGCTCCTAAAGCAATATATCCAGTGCCAGCATACACCGCCCCAGTGAATACAGTTCCACCAGAATATGACGTAAACAATACTACTATTTTTGTTGGCAATTTGGATGTTAATGTCTCAGAGGAGGAGCTGAAGCAAAACTTTCTGCAATTTGGAGAGATTGTTTCTGTCAAAGTACATGCCGCCAAAGCATGTGGTTTTGTTCAATTTGGGGCTAGAGCATCTGCTGAAGAAGCCATTCAGAAGATGCAGGGAAAGATAATAGGTCAACAAGTGATTCGAGTTTCTTGGGGTAGGCCCCTAACAGCTAGACAGGACGTACCTGGTGCATGGGGACAACAGGTGGATCCAAGTCAATGGAGTGCATACTATGGGTATGGACAGCCGGGTTATGAAGCTTATGCATATGGGGCTGCTCAGGATCCTTCGATGTATGCATATGCTGGATATGCTGGCTATGCACAATACCCCCAACAGGTTGAAGGTGTGCAAGACGCATCAGTTATGTCTGTGCCTACCATGGAACAAAGGGAGGAGTTGTATGATCCTCTGGCAATGCCCGATGTTGATAAGTTAAATGCTGCATATCTCTCAGTACACGGAAATGCCATTTTAGGGCGGTCCCTCTGGCACAAAAGTCATTCCTCATCCTTACAACAGCAAGCTTAG 1302 0.4401 MATTYHQPASIEEVRTLWIGDLQYWVDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGFVEFVSHAAAERVLQSYNGTQMPGTEQTFRLNWASFGIGERRPDAGPDHSIFVGDLAPDVTDYLLQETFRTHYSSVRGAKVVTDPNTGRSKGYGFVKFADESERNRAMSEMNGVYCSTRPMRISAATPKKTTAYQQNPYAAVAVATAVVAPAPAPKAIYPVPAYTAPVNTVPPEYDVNNTTIFVGNLDVNVSEEELKQNFLQFGEIVSVKVHAAKACGFVQFGARASAEEAIQKMQGKIIGQQVIRVSWGRPLTARQDVPGAWGQQVDPSQWSAYYGYGQPGYEAYAYGAAQDPSMYAYAGYAGYAQYPQQVEGVQDASVMSVPTMEQREELYDPLAMPDVDKLNAAYLSVHGNAILGRSLWHKSHSSSLQQQA 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g05239 433 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 108 187 IPR000504 GO:0003723
Tsu02g05239 433 CDD RRM2_SECp43_like 107 186 - -
Tsu02g05239 433 SUPERFAMILY RNA-binding domain, RBD 6 83 IPR035979 GO:0003676
Tsu02g05239 433 Gene3D - 98 198 IPR012677 -
Tsu02g05239 433 PANTHER POLYADENYLATE-BINDING PROTEIN RBP45A-RELATED 6 370 - -
Tsu02g05239 433 SMART rrm1_1 240 307 IPR000504 GO:0003723
Tsu02g05239 433 SMART rrm1_1 109 183 IPR000504 GO:0003723
Tsu02g05239 433 SMART rrm1_1 16 91 IPR000504 GO:0003723
Tsu02g05239 433 Gene3D - 14 94 IPR012677 -
Tsu02g05239 433 SUPERFAMILY RNA-binding domain, RBD 101 197 IPR035979 GO:0003676
Tsu02g05239 433 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 15 95 IPR000504 GO:0003723
Tsu02g05239 433 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 239 311 IPR000504 GO:0003723
Tsu02g05239 433 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 6 370 - -
Tsu02g05239 433 SUPERFAMILY RNA-binding domain, RBD 218 339 IPR035979 GO:0003676
Tsu02g05239 433 CDD RRM1_SECp43_like 16 96 - -
Tsu02g05239 433 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 17 85 IPR000504 GO:0003723
Tsu02g05239 433 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 241 305 IPR000504 GO:0003723
Tsu02g05239 433 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 110 175 IPR000504 GO:0003723
Tsu02g05239 433 Gene3D - 226 317 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g05239 Tsu-Chr2 61262393 61267846 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g05239 16 335 Eukaryotic Initiation Factors Gene Family AT1G22760 22.754 2.10e-16 79.7