Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g05237 ATGAGAAAGCCAGAGATTTCTAGTACTAAAAATAACAACATTGATAAGAAGAAGCTTAGAAAAGGATTATGGTCACCAGAAGAAGATGAGAAACTTATGAATTATATGGTAAGGAATGGACAAGGTTGTTGGAGTGATGTAGCAAGAAATGCTGGATTAGAAAGATGTGGCAAAAGTTGTAGGCTAAGATGGATTAATTATTTGAGGCCTGATCTTAAAAGAGGTGCTTTCTCACAACAAGAAGAAGAACTCATCATTCATTTTCATACCCTTCTTGGAAACAGGTTCATTAATATTCTTTTCCATTCATATATCATATCATTGATTAAATTGTAG 336 0.3304 MRKPEISSTKNNNIDKKKLRKGLWSPEEDEKLMNYMVRNGQGCWSDVARNAGLERCGKSCRLRWINYLRPDLKRGAFSQQEEELIIHFHTLLGNRFINILFHSYIISLIKL 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g05237 111 SMART sant 20 70 IPR001005 -
Tsu02g05237 111 CDD SANT 24 68 IPR001005 -
Tsu02g05237 111 Gene3D - 18 74 - -
Tsu02g05237 111 ProSiteProfiles Myb-like domain profile. 16 68 IPR001005 -
Tsu02g05237 111 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 16 72 IPR017930 -
Tsu02g05237 111 SUPERFAMILY Homeodomain-like 23 98 IPR009057 -
Tsu02g05237 111 PANTHER MYB DOMAIN PROTEIN 55 1 97 - -
Tsu02g05237 111 PANTHER TRANSCRIPTION FACTOR MYB46 1 97 - -
Tsu02g05237 111 Pfam Myb-like DNA-binding domain 21 68 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g05237 Tsu-Chr2 61248070 61248405 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g05237 1 99 MYB Transcription Factor Family AT5G12870 72.727 1.58e-49 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Tsu02g05237 Myb_DNA-binding 2.3e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g05237 K09422 - cpap:110811815 175.637