Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g05236 ATGGTACTTTTTGATCCCTCTTTTCctcaaaaaatattcaaacgaACAAGATTTTATTCCAGGGCAACAATTGCAGAGATGCATCAAAAATTTGGGCGAGAGATTCGTGTTTTTCAAACATTATCACTTTCTGCATCACCAAATTCTACCAAACAAGAGGAGCCTCAAGAAGAGTTCTACGACTTTACTGCTGAAGATTATTACAAAACTTTGGCTACTAAAAAGGATGATCAATATCTCAAGACTCGAAAACTCCAAGAAGCAGATGCGGCGGCTTGCAGGTCAAGAATGACTAAGGCTGTAATTAGAGTTCGCTTCCCTGATAATCACACATTGGAAGCTACTTTTCAACCTTCAGACACTATCCAGAGTTTAATTCATCTCCTCAATAAAGTCATTGCACAACCACATAAGCCATTTTACTTATttaCTACTCCGCCGAAGAAGGTGATCAGAGATGTATCTCAAGATTTCTATGCTGCTGGATTTTGTCCTGGAGCTATTGTATATTTTTCATATGATGTTTCAAAAGGTGATGGAAGGGATGATGGCCCTTACCTACTAGAAGAGGTGTTGTCTTTGAATAGTGCTAATGATCAAGGTCAGCTGTCTGAGCCATTACAGTCCGCACCGGTGTCTACTGAGTATGTCGTGCAAGCTCCTACGGTTGAAAAACGAAAACCGGTGGAGAAAAAGATTGTTAAGCCAAAGTGGCTGAAAATTTAA 726 0.3884 MVLFDPSFPQKIFKRTRFYSRATIAEMHQKFGREIRVFQTLSLSASPNSTKQEEPQEEFYDFTAEDYYKTLATKKDDQYLKTRKLQEADAAACRSRMTKAVIRVRFPDNHTLEATFQPSDTIQSLIHLLNKVIAQPHKPFYLFTTPPKKVIRDVSQDFYAAGFCPGAIVYFSYDVSKGDGRDDGPYLLEEVLSLNSANDQGQLSEPLQSAPVSTEYVVQAPTVEKRKPVEKKIVKPKWLKI 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g05236 241 PANTHER PLANT UBX DOMAIN-CONTAINING PROTEIN 1-RELATED 22 241 - -
Tsu02g05236 241 CDD UBX2_UBXN9 100 173 - -
Tsu02g05236 241 PANTHER PLANT UBX DOMAIN-CONTAINING PROTEIN 1 22 241 IPR044232 GO:0032984|GO:0051117
Tsu02g05236 241 Pfam UBX domain 98 154 IPR001012 GO:0005515
Tsu02g05236 241 Gene3D - 34 170 - -
Tsu02g05236 241 ProSiteProfiles UBX domain profile. 95 171 IPR001012 GO:0005515
Tsu02g05236 241 SUPERFAMILY Ubiquitin-like 73 171 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g05236 Tsu-Chr2 61238613 61239912 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g05236 29 118 C2H2 Transcription Factor Family AT2G01650 32.979 1.50e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g05236 K15627 - gmx:100792947 276.559