Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g05231 ATGGGTGCTAGTTGCTCAAGATTCTGCTTATGCTGCTTGCCCTCCAATACAAAATCCAATCTTCATCACTTACTTGATCATGATGATGGGAACAAGAGTGATGAGAAGGATTCTTGGGGTGGTTTAACTGAGTTCAGCTTGGACCAACTAAGAACTGCCACGTCAGAATTTTCACCAGACAACATTGTATCAGAACATGGTGAGAAAGCTCCTAATATTGTCTACAAAGGAATAATTGGAGATAATATGTTGGTTGCTGTGAAACGTTTCAACAAGTCTGATTGGCCTGATTCACACCAATTCCGAGAGGAAGCACGAGAAGTGGGGAATCTAAGAAATGAGAGATTAGCTAACTTGGTTGGTTATTGCTGTGAAGGAGAAGAGAGATTGCTAGTTGCAGAGTTTATGCCTAATGAAACTCTCTCTAAACATCTCTTTCACTGGGAGACTCAGCCAATGAAATGGGCAATGAGGTTGAGAGTGGCCTTGTATTTAGCACAAGCTTTGGAATACTGCAGCAATAGAGGAAAGACATTGTACCATGATCTTAATGCTTACAGAATTTTGTTTGATCAAGATGGCAACCCTAGACTGTCTTGTTTTGGACTAATGAAAAACAGCAGCGATGGTAGAAGTTACAATACAAATTTAGCTTTTGCCCCTCCAGAATATTCGAGGACAGGAAAAGTTACTCCTGAAAGTGTAATTTACAGTTTTGGAACACTTTTGCTTGATCTTCTGAGTGGAAAGCATATCCCACCCAGCGATGCACTTGATCTTATTCGTGCGAAAAAATTTCAGTTGTTAATGGACTCATGTTTGGAAGGTCATTTTTCAAATGACGATGGAACTGAGTTATTGAGATTAGCTTCACGCTGTTTGCAGTACGAACCTTGCGAGAGACCAAATGCCAAGTCACTTGTGAATGCTCTAACTCCTCTTCAGAAAGAAACTTCAGTTTCATCACTGGTTTTATTGGGCATACTGGATGAGAGTGAACCATCAAAGGAAACAGTTTCATTGACACCATTTGGTGAAGCTTGCTCTAGAAAAGATCTCATTACAATACACAAAATTTTGGAGAAAGTGGGGTACAAGGATGAAGAAGATGTTGCAAATGAGCTTTCTTTCCAAGTGTGGACAGATCAAATACAAGGAACACTGAATTCGAAGAAACATGGAGATTCTGCTTTTCTAGCTGGAGAATTCTCCAAGGCCATTGACTTTTATACACAATTCATCAATGGTGGGACTATGGTATCACCAACTGTGCATGCAAGGAGGTGCTTGTGTTACTTGATGAACAACATGACACAAGAAGCCCTAGGAGATGCCATGCAAGCTCAATTAATATCACCCACCTGGCCGACCGCATACTATCTTCAAGCAGTGGTCTTCTTCACCCTTGGGATGGACATTGATGCTCATGAAAGCCTCAAAGAAGCCAAAACATTGGAAACCAGTGCATAG 1470 0.4095 MGASCSRFCLCCLPSNTKSNLHHLLDHDDGNKSDEKDSWGGLTEFSLDQLRTATSEFSPDNIVSEHGEKAPNIVYKGIIGDNMLVAVKRFNKSDWPDSHQFREEAREVGNLRNERLANLVGYCCEGEERLLVAEFMPNETLSKHLFHWETQPMKWAMRLRVALYLAQALEYCSNRGKTLYHDLNAYRILFDQDGNPRLSCFGLMKNSSDGRSYNTNLAFAPPEYSRTGKVTPESVIYSFGTLLLDLLSGKHIPPSDALDLIRAKKFQLLMDSCLEGHFSNDDGTELLRLASRCLQYEPCERPNAKSLVNALTPLQKETSVSSLVLLGILDESEPSKETVSLTPFGEACSRKDLITIHKILEKVGYKDEEDVANELSFQVWTDQIQGTLNSKKHGDSAFLAGEFSKAIDFYTQFINGGTMVSPTVHARRCLCYLMNNMTQEALGDAMQAQLISPTWPTAYYLQAVVFFTLGMDIDAHESLKEAKTLETSA 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g05231 489 SUPERFAMILY TPR-like 391 485 IPR011990 GO:0005515
Tsu02g05231 489 Gene3D Transferase(Phosphotransferase) domain 1 137 328 - -
Tsu02g05231 489 Gene3D Phosphorylase Kinase; domain 1 31 135 - -
Tsu02g05231 489 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 1 487 - -
Tsu02g05231 489 SUPERFAMILY Protein kinase-like (PK-like) 37 315 IPR011009 -
Tsu02g05231 489 Pfam Protein tyrosine and serine/threonine kinase 75 311 IPR001245 GO:0004672|GO:0006468
Tsu02g05231 489 ProSiteProfiles Protein kinase domain profile. 60 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g05231 489 Gene3D Tetratricopeptide repeat domain 382 489 IPR011990 GO:0005515
Tsu02g05231 489 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 1 487 IPR045845 GO:0004672|GO:0009742
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g05231 Tsu-Chr2 61210361 61214902 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g05231 45 338 Glycoside Hydrolase AT3G07070 33.123 1.25e-40 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Tsu02g05231 PK_Tyr_Ser-Thr 3.6e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g05231 - - gmx:732542 790.03