Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g05215 ATGAACTCGGACACGTTACCATCCTCCACGGCGTCGTTTTGGTGCTATAGTTGCACTCGTTTCGTTCATCTCTTAGATCATAACGACGTCGTTTGTCCACACTGTCAAAACGGTTTCGTTGAAGAGATTCACGCCGGTAATTCTCCGGCGGTTTCACTTTTCGCCGACGGAATTCAAGCTTCCAGGAGACAAAATTCCCGCCGGAGACGTCGTAACGCTGGTGGTAGCCGCTCACCTTTTAATCCAGTAATCGTTCTCCGTGGACCTAGAGAAGATGGTGTCGGCGGTGGCGGTGGCGGAGTTGAAAACGAAGGGAGTAGCTTTGAATTATACTATGAAGATAGCAACGGTAACGGTAACGGCACCGATCTACGACCACTCCCGCCGAATATGTCAGAGTTATTGCTCGGTTCCGGATTCGATCGGTTGTTAGAGCAATTTTCTCAGATCGAAATCAACGGTTTCGGTAGAGCAGAAAATCCACCGGCGTCAAAGGCGGCGATAGAATCAATACCAACGGTTGAGATCGCCGAAGAAGAAATAGAAGCCGAAACGCACTGTGCGGTTTGTACAGAACCTTTCCACCTAGGTTCGGAAGCGCGTAAGATGCCTTGTAAGCATCTTTATCATTCCGATTGCATTCTTCCATGGCTTTCGATGCGAAATTCGTGTCCGGTATGCCGTCACGAGTTACCGTCCGATCAAAATCCTCCGGAGAGTATAATATCCGGTCAGATCAATGAAGAATCAGTTGGATTGACGATATGGAGGTTACCGGGAGGTGGATTTGCGGTTGGGAGATTCGCCGGTGGTCGGAGAGCCGGCGAGATTCAGTTACCGGTAGTTTACACGGAGATGGATGGTGCTAATACTAATGACTCAAACGAAGATTCTAGAAGATTCTCTTTTGCAGTTGGAAACGATAGAGTTAGAGAAAGACGTGGAATTCGAAGAATTTTTCGaaatttcttttccttttttggtaATGTTAATTTAAACCGTAGCTTTTCTGGTTCAATGTTTAGTAGAAGCTCACGTAGTAGAAGAAGCAGAACTACTTGGGTTGCAGAAGaatga 1077 0.4615 MNSDTLPSSTASFWCYSCTRFVHLLDHNDVVCPHCQNGFVEEIHAGNSPAVSLFADGIQASRRQNSRRRRRNAGGSRSPFNPVIVLRGPREDGVGGGGGGVENEGSSFELYYEDSNGNGNGTDLRPLPPNMSELLLGSGFDRLLEQFSQIEINGFGRAENPPASKAAIESIPTVEIAEEEIEAETHCAVCTEPFHLGSEARKMPCKHLYHSDCILPWLSMRNSCPVCRHELPSDQNPPESIISGQINEESVGLTIWRLPGGGFAVGRFAGGRRAGEIQLPVVYTEMDGANTNDSNEDSRRFSFAVGNDRVRERRGIRRIFRNFFSFFGNVNLNRSFSGSMFSRSSRSRRSRTTWVAEE 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g05215 358 CDD RING-H2_RNF181 187 231 - -
Tsu02g05215 358 MobiDBLite consensus disorder prediction 57 98 - -
Tsu02g05215 358 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 153 234 IPR013083 -
Tsu02g05215 358 SMART ring_2 187 227 IPR001841 -
Tsu02g05215 358 Pfam Ring finger domain 186 228 IPR001841 -
Tsu02g05215 358 Pfam Protein of unknown function (DUF1117) 251 349 IPR010543 -
Tsu02g05215 358 ProSiteProfiles Zinc finger RING-type profile. 187 228 IPR001841 -
Tsu02g05215 358 Pfam zinc-ribbon 12 43 IPR039525 GO:0061630
Tsu02g05215 358 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 8 314 - -
Tsu02g05215 358 PANTHER OS05G0110000 PROTEIN 8 314 - -
Tsu02g05215 358 SUPERFAMILY RING/U-box 167 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g05215 Tsu-Chr2 61088729 61091076 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g05215 123 239 C3H Transcription Factor Family AT5G01980 45.299 9.83e-28 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g05215 - - aip:107612938 447.203
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g05215 02 61088729 61091076 Tsu02g05215 02 61088729 61091076 ECH
Tsu02g05215 02 61088729 61091076 Tsu02g02121 02 20832141 20834284 ECH
Tsu04g01163 04 11545243 11546549 Tsu02g05215 02 61088729 61091076 ECH
Tsu02g05215 02 61088729 61091076 Tsu02g02121 02 20832141 20834284 PCT