Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g05210 ATGCTTTCTCCGAACGCCTTTGTGCAAAATTTCTGTGTTCCTGACACAGTAAACCCGGTAACAAATGGATTTGAAATGGaagattcatcatcatcacattctTCTGTTACAAGCTCATATGGAGAATATGAACACACAAGATATTCCAATAACATCCTCAGATACATAAGTGACATCCTCATGGATGAAGAGGATGACTTGGAAAAACCTTGCATGTTGCAGGAATGTTTAAGACTCCAAGCTGCTGAAAAATCATTCTATGATGTTCTTGGTCACAACTATCCTAATTCATCATGTGAACATTCCACCGACACAAGTGGAAATTTCGGTCGCACTGCTGGTTTTGAGAGCAATAGCAGCAGCTGCTCCACTGATAACTCATATGAGTCTGATTGGGTCAACCATGATGTAACAGAAGCTGCTAATGATACTTGTAATGCCATTCAGCCAGGGATGGTGGAAGAGTTTTCAGCTTCAGTAGTACCAAGAGAAAAGAGAAGTCATAAGATGAATGGTGATGATACTTGTAATGAACAAGAGGGAAGAGGTAACAAGCTTCCAGCTATCTTCTCTGATGAATTAGAGCCACCAGAGATCTTAGATGAGGTACTGCTTTGTCAGACAGGAAGGacacaaaacaaacaagtatCACAGAATGTCAATTCAGGAGGGAAGGCAAAGGGAACAGGTTCGCGTTCGAAGAAAGTATCTACTACTAACAATGCCCGAGCAGTGGATTTGTGGACTATGCTAACTCAATGTGCGCAGGCCGTGGCGAGCTATGATCAAAGGAATACAAATGAGCTACTCAAGCAGATTAGGCAACATTCTTCGGCTTATGGCGATGGACTCCAGCGTTTAGCTCATTACTTTGCTAATGGTCTTGAAATAAGATTGGCTGCGGAGACGCCATCGTATAAGCCACTTGGTCTGGCTACTGCTGGAGATATGTTGAAAGCTTACGAACTATTCGTTACCTCATCTCCTTTGCAGAGAATGACGAATATGTTGTTAACCAATACAATTATCAAATTAGTGAAGAATGAGATCAGCAGTATTCATATTATCGATTTCGGAATTTGCTATGGTTTCCAATGGCCTTGCATCATCAAAAGACTTTCATTAAGACCCGGTGGTCCTCCAAAGCTTCGAATTACAGGAATTGATCTTCCGCGAGCAGGATTTAGGCCTGCAGAGAGGGTGGAGGAAACCGGACGGCGTTTAGAAAACTACTGCAAGAAGTTCAATGTACCATTTGAATACAACTGCATTGCACAGAAATGGGAAACTATCCGGCTTGAGGATCTAAAGATAGACAGGAATGAAATAACTCTTGTTAGTTGTTTATACAGACTGAAGAACCTGCCTGATGAAACAGTTGCAGTCAATTGTCCAAGAGAAGCTTTGTTGAAGCTGATCAGGAAGATTAATCCAAAAATCTTCTTCCACGGTGTTATCAATGGAAGTTATAGTGCACCGTTTTTCCTGACTCGGTTTAGGGAAGCACTATACCACTTCTCGTCATTGTTTGATATGTTTGAGGCTAATGTGCCTCGCGAAGATCCACAGAGGTTGATGCTTGAGACAGGATTGTTTGGTAGGGATGCCATAAATGTTATAGCTTGTGAGGGTGCAGGGAGAGTTGAAAGGCCTGAGACCTACAAGCAATGGCAGATCAGGAACAGAAGAGCTGGGTTTAAGCAAATCAGGTTGGACTCTGAGTTAGTGAATGAAACCAAAAAGATGGTGGAGAAAGAATACCATAAAGATTTTGTAGTTGATGAGGATGGCAAGTGGATTTTGCAAGGATGGAAAGGGCGTATTTTGAATGCTTTATCTGCTTGGGTTCCTGCTTAA 1857 0.4125 MLSPNAFVQNFCVPDTVNPVTNGFEMEDSSSSHSSVTSSYGEYEHTRYSNNILRYISDILMDEEDDLEKPCMLQECLRLQAAEKSFYDVLGHNYPNSSCEHSTDTSGNFGRTAGFESNSSSCSTDNSYESDWVNHDVTEAANDTCNAIQPGMVEEFSASVVPREKRSHKMNGDDTCNEQEGRGNKLPAIFSDELEPPEILDEVLLCQTGRTQNKQVSQNVNSGGKAKGTGSRSKKVSTTNNARAVDLWTMLTQCAQAVASYDQRNTNELLKQIRQHSSAYGDGLQRLAHYFANGLEIRLAAETPSYKPLGLATAGDMLKAYELFVTSSPLQRMTNMLLTNTIIKLVKNEISSIHIIDFGICYGFQWPCIIKRLSLRPGGPPKLRITGIDLPRAGFRPAERVEETGRRLENYCKKFNVPFEYNCIAQKWETIRLEDLKIDRNEITLVSCLYRLKNLPDETVAVNCPREALLKLIRKINPKIFFHGVINGSYSAPFFLTRFREALYHFSSLFDMFEANVPREDPQRLMLETGLFGRDAINVIACEGAGRVERPETYKQWQIRNRRAGFKQIRLDSELVNETKKMVEKEYHKDFVVDEDGKWILQGWKGRILNALSAWVPA 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g05210 618 ProSiteProfiles GRAS family profile. 238 616 IPR005202 -
Tsu02g05210 618 MobiDBLite consensus disorder prediction 214 238 - -
Tsu02g05210 618 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 8 101 IPR005202 -
Tsu02g05210 618 MobiDBLite consensus disorder prediction 161 180 - -
Tsu02g05210 618 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 149 617 IPR005202 -
Tsu02g05210 618 MobiDBLite consensus disorder prediction 161 183 - -
Tsu02g05210 618 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 149 617 - -
Tsu02g05210 618 Pfam GRAS domain family 249 615 IPR005202 -
Tsu02g05210 618 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 8 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g05210 Tsu-Chr2 61055271 61057127 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g05210 48 617 GRAS Transcription Factor Family AT2G29060 45.620 1.42e-175 512
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Tsu02g05210 GRAS 3.9e-104 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g05210 - - cam:101504630 959.518
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g05210 02 61055271 61057127 Tsu02g05210 02 61055271 61057127 ECH
Tsu02g05210 02 61055271 61057127 Tsu02g02113 02 20744013 20745863 ECH
Tsu02g02113 02 20744013 20745863 Tsu02g05210 02 61055271 61057127 PCT