Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g05201 ATGGGTACTGTTACTATCTTGTACATTGTGTCTCTAATTTTGTCATTAACAATGTGGATTATGGTAGATGCTAGAATCCCAGGTGTTTACAACGGTGGTTCATGGCAAACCGCTCACGCCACTTTCTACGGTGGTTCTGATGCTTCCGGCACCATGGGTGGAGCATGTGGTTATGGAAACTTATACAGTCAAGGTTATGGAGTTAACACTGCAGCATTAAGTACTGCACTTTTCAACAGTGGACTTAGTTGTGGTTCTTGCTTTGAATTGAAATGTGCAAATGATAAACAATGGTGTCATTCTGGTAGTCCTTCCATTTTCATTACAGCTACTAATTTTTGTCCTCCTAATTTTGCTCAACCTAGTGACAATGGTGGTTGGTGTAACCCTCCTCGCCCTCATTTCGATCTCGCCATGCCTATGTTCCTTAAAATCGCTGAATATCGCGCCGGAATCGTCCCTGTCGCCTATCGCCGGGTGCCGTGTAGGAAGCGTGGTGGGATCAGATTCACAATTAACGGATTCCGTTACTTTAACTTGGTACTAATCAGCAACGTCGCGGGTGCAGGTGATATCGTGCGCACCTATGTTAAAGGTTCAAGAACAGAGTGGATGCCAATGAGCAGAAACTGGGGGCAAAATTGGCAATCAAATTCAGTTTTAGTGGGTCAGTCTTTGTCCTTCAGAGTTACCGGTAGTGACCGTCgcacttccacttcttggaacaTTGCCCCACAAAATTGGCAATTTGGTCAAACTTTTACCGGAAAGAATTTTCGTGTTTGA 786 0.4313 MGTVTILYIVSLILSLTMWIMVDARIPGVYNGGSWQTAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNSGLSCGSCFELKCANDKQWCHSGSPSIFITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVAYRRVPCRKRGGIRFTINGFRYFNLVLISNVAGAGDIVRTYVKGSRTEWMPMSRNWGQNWQSNSVLVGQSLSFRVTGSDRRTSTSWNIAPQNWQFGQTFTGKNFRV 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g05201 261 Pfam Expansin C-terminal domain 168 245 IPR007117 -
Tsu02g05201 261 PRINTS Expansin/Lol pI family signature 34 49 IPR007118 GO:0005576
Tsu02g05201 261 PRINTS Expansin/Lol pI family signature 150 166 IPR007118 GO:0005576
Tsu02g05201 261 PRINTS Expansin/Lol pI family signature 242 256 IPR007118 GO:0005576
Tsu02g05201 261 PRINTS Expansin/Lol pI family signature 74 92 IPR007118 GO:0005576
Tsu02g05201 261 PRINTS Expansin/Lol pI family signature 204 218 IPR007118 GO:0005576
Tsu02g05201 261 PRINTS Expansin/Lol pI family signature 52 70 IPR007118 GO:0005576
Tsu02g05201 261 SUPERFAMILY PHL pollen allergen 164 256 IPR036749 -
Tsu02g05201 261 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 53 167 IPR007112 -
Tsu02g05201 261 PANTHER EXPANSIN-A15 6 260 IPR002963 GO:0009664
Tsu02g05201 261 SUPERFAMILY Barwin-like endoglucanases 34 185 IPR036908 -
Tsu02g05201 261 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 177 256 IPR007117 -
Tsu02g05201 261 SMART dpbb_1 70 157 IPR007112 -
Tsu02g05201 261 PRINTS Expansin signature 213 234 IPR002963 GO:0009664
Tsu02g05201 261 PRINTS Expansin signature 92 103 IPR002963 GO:0009664
Tsu02g05201 261 PRINTS Expansin signature 142 155 IPR002963 GO:0009664
Tsu02g05201 261 PRINTS Expansin signature 106 116 IPR002963 GO:0009664
Tsu02g05201 261 PRINTS Expansin signature 178 199 IPR002963 GO:0009664
Tsu02g05201 261 PRINTS Expansin signature 166 178 IPR002963 GO:0009664
Tsu02g05201 261 PRINTS Expansin signature 242 258 IPR002963 GO:0009664
Tsu02g05201 261 PRINTS Expansin signature 125 142 IPR002963 GO:0009664
Tsu02g05201 261 PRINTS Expansin signature 65 79 IPR002963 GO:0009664
Tsu02g05201 261 Pfam Lytic transglycolase 70 157 IPR009009 -
Tsu02g05201 261 Gene3D - 167 259 IPR036749 -
Tsu02g05201 261 PANTHER EXPANSIN 6 260 - -
Tsu02g05201 261 Gene3D - 23 163 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g05201 Tsu-Chr2 60988116 60990198 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g05201 7 261 Expansin Gene Family AT2G39700 83.137 6.00e-165 455
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g05201 - - gmx:100811296 493.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g05201 02 60988116 60990198 Tsu02g05201 02 60988116 60990198 ECH
Tsu02g05201 02 60988116 60990198 Tsu05g03216 05 43352150 43354364 ECH
Tsu02g05201 02 60988116 60990198 Tsu02g02100 02 20600452 20603806 ECH
Tsu04g01147 04 11370746 11374127 Tsu02g05201 02 60988116 60990198 ECH
Tsu02g05201 02 60988116 60990198 Tsu02g02100 02 20600452 20603806 PCT