Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g05199 ATGGGACTTTGTTTTAGTGCTAATAACACTGGGTTAAATTCTAAGAATGACTCCCCAACAGTTGGAAATGTTCTGAGCAGTGCAAACAATAAGGTCTCTGCTGGATTAGTCCCTCAGGCTCAGATTGCTCAAACTGAGGGTGAGATCTTGCAATCATCCAATTTAAAGAGATATACCTTTGCAGAACTTCGGATAGCCACCGGAAATTTTCGTCCAGATAATGTGTTAGGAGAAGGTGGTTTTGGAACAGTTTTTAAGGGTTGGATTGATGAGACTTCATTGGCTGCTGTCAAACCTGGTAATGGCATTGTTATTGCTGTCAAAAGACTTAATCGAGAAGGCTTCCAAGGTCACAGGGAGTGGTTGGCTGAAGTCAactatcttggaaagttttctCATCCTAATTTAGTGAGATTGATTGGTTATTGCCTTGAAAATGGACAACACCTTCTCGTCTATGAATTTATGCGCAATGGAAGTCTGGAAAATCACTTGTTTAGGAGAGGCTCATATTTTCAACCTCTTCCTTGGAGCCTCCGTATGAAGGTTGCCCTTGATGCTGCAAAGGGGCTTGCATTTCTGCACAACGCTGAAACGCAAGTGATATATAGAGATTTTAAGACTTCAAATATCTTGTTGGATACTGATTATAATGCAAAGCTTTCTGATTTTGGCCTGTCAAGGGATGGTCCAGAAGATGACGAAACCCACGTCTCCACCAGGGTAATGGGGACCTATGGATATGCAGATCCTGAATATGTAGAGTCAGGTCATCTTACTACTAAGAGTGATGTCTATAGTTATGGAGTTGTCTTGTTGGAAATTTTATCTGGTAGGCGGGCGGTTGACAAGAATAGACCACCTGGAGAGCACAAGTTGGTTGAATGGGCTAAACCATATCTGGAAAACAAACGCAAGGTTTTTCGTGTGTTAGACAGTCGGCTTGAAAGGAAGTTTTCATCAAGTGAGGCCTACAAGGTAGCCGCCCTTGCCTTGCAATGCCTATCAGAAGAATCCAAGTCCAGACCTAGCATGGATGAGGTTGTTAGAACTTTGCAGGAGTTGATGCACAGCCGTCAAACCCGGCAGAACTGA 1095 0.4247 MGLCFSANNTGLNSKNDSPTVGNVLSSANNKVSAGLVPQAQIAQTEGEILQSSNLKRYTFAELRIATGNFRPDNVLGEGGFGTVFKGWIDETSLAAVKPGNGIVIAVKRLNREGFQGHREWLAEVNYLGKFSHPNLVRLIGYCLENGQHLLVYEFMRNGSLENHLFRRGSYFQPLPWSLRMKVALDAAKGLAFLHNAETQVIYRDFKTSNILLDTDYNAKLSDFGLSRDGPEDDETHVSTRVMGTYGYADPEYVESGHLTTKSDVYSYGVVLLEILSGRRAVDKNRPPGEHKLVEWAKPYLENKRKVFRVLDSRLERKFSSSEAYKVAALALQCLSEESKSRPSMDEVVRTLQELMHSRQTRQN 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g05199 364 CDD STKc_IRAK 76 355 - -
Tsu02g05199 364 PANTHER OS01G0588500 PROTEIN-RELATED 22 358 - -
Tsu02g05199 364 Pfam Protein tyrosine and serine/threonine kinase 74 352 IPR001245 GO:0004672|GO:0006468
Tsu02g05199 364 ProSiteProfiles Protein kinase domain profile. 70 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g05199 364 Gene3D Phosphorylase Kinase; domain 1 44 155 - -
Tsu02g05199 364 ProSitePatterns Protein kinases ATP-binding region signature. 76 108 IPR017441 GO:0005524
Tsu02g05199 364 SUPERFAMILY Protein kinase-like (PK-like) 48 357 IPR011009 -
Tsu02g05199 364 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL11-RELATED 22 358 - -
Tsu02g05199 364 Gene3D Transferase(Phosphotransferase) domain 1 156 364 - -
Tsu02g05199 364 ProSitePatterns Serine/Threonine protein kinases active-site signature. 201 213 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g05199 Tsu-Chr2 60945676 60947446 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g05199 48 352 Glycoside Hydrolase AT3G07070 48.039 4.72e-97 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Tsu02g05199 PK_Tyr_Ser-Thr 6.6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g05199 - - gmx:100788856 523.087