Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g05198 ATgcataaaaatcataaatcaatCTCCCCTCTCTCACACACACTCCACTGCTCTAAAAATTTATGCTGGATATTGCCATCTTCAGTGAACATGGGAGTTTGTTTGAGCGCTCATAACATTGGGTCAAATTCTAAGAATGCGAGTACAGATGGAAATGTTCCGTGCAACACAAACAATAAGGTTTCTGCTGTATTAGTGCCTCAGACTGCTCGAACTGAGGGTGAGATCTTGCAATCATCCAAATTAAAGAGCTATACCTATGGAGAACTTCGGATAGCCACTAGAAATTTTCATCCAGATAATGTGTTAGGAGAAGGTGGTTTTGGATCAGTTTTTAAGGGTTGGATTGATGAGAAGTCGAATTTGTCGACTGCTGTCAAACCTGGTACTGGCATTATAGCTGTCAAAAGACTTAATCAAGATGGCTGCCAAGGTCACAGGGAGTGGCTGGCTGAAGTCAactatcttggaaagttttctCATCCTCATTTAGTGAGATTGATCGGTTATTGCCTTGAAGATGAACACCACCTTCTCGTCTATGAATTTATGCCCCATGGAAGCTTGGAGAACCACTTGTTTAGGAGAGGCTCATTTCAACCTCTTTCTTGGAGCCTCCGTCTGAAGGTCGCTCTTGCTGCTGCCAAAGGGCTTGCATTTCTGCACAACGCTGAAACGAAAGTGATATATAGGGATTTTAAGACTTCAAATATCTTGTTGGATTCTGATTATAATGCAAAGCTTTCTGATTTTGGGCTGGCAAGGGATGGTCCAACAGGTGACAAAAGTCATGTCACCACTAGGATTATGGGAACCGATGGATATGCAGCTCCTGAATATCGAGCAACAGGTCATCTTACTACTAAGTGTGATGTCTATAGTTTTGGCGTTGTCTTGTTGGAAATGTTATCTGGTAAGAGGGCGGTTGACAAGAATAGACCACCTGGAGAAATCAGGTTGGTCGAATGGGCTAAACCATATCTGGCTAAGAAACGCAAGGTTTTCAGTGTGTTAGACAGTCGGCTTGAAGGGCAGTATTCAGCAGTTGAGGTGTACAAAGTAACCGCCCTTGCTTTGCGATGCCTATTAGAAGATCCCAAGTCCAGGCCTAACATGGATGAAGTTGTTAGAACTTTGGAGCAGCTGATGTACAACCTTCAAATTAGCAGAACCGACTGTCCTGCTGCCTGA 1191 0.4232 MHKNHKSISPLSHTLHCSKNLCWILPSSVNMGVCLSAHNIGSNSKNASTDGNVPCNTNNKVSAVLVPQTARTEGEILQSSKLKSYTYGELRIATRNFHPDNVLGEGGFGSVFKGWIDEKSNLSTAVKPGTGIIAVKRLNQDGCQGHREWLAEVNYLGKFSHPHLVRLIGYCLEDEHHLLVYEFMPHGSLENHLFRRGSFQPLSWSLRLKVALAAAKGLAFLHNAETKVIYRDFKTSNILLDSDYNAKLSDFGLARDGPTGDKSHVTTRIMGTDGYAAPEYRATGHLTTKCDVYSFGVVLLEMLSGKRAVDKNRPPGEIRLVEWAKPYLAKKRKVFSVLDSRLEGQYSAVEVYKVTALALRCLLEDPKSRPNMDEVVRTLEQLMYNLQISRTDCPAA 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g05198 396 PANTHER KINASE 1B 47 388 - -
Tsu02g05198 396 PANTHER OS01G0588500 PROTEIN-RELATED 47 388 - -
Tsu02g05198 396 Gene3D Transferase(Phosphotransferase) domain 1 184 392 - -
Tsu02g05198 396 ProSitePatterns Serine/Threonine protein kinases active-site signature. 228 240 IPR008271 GO:0004672|GO:0006468
Tsu02g05198 396 CDD STKc_IRAK 103 382 - -
Tsu02g05198 396 Pfam Protein tyrosine and serine/threonine kinase 100 379 IPR001245 GO:0004672|GO:0006468
Tsu02g05198 396 ProSiteProfiles Protein kinase domain profile. 97 383 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g05198 396 ProSitePatterns Protein kinases ATP-binding region signature. 103 136 IPR017441 GO:0005524
Tsu02g05198 396 Gene3D Phosphorylase Kinase; domain 1 72 183 - -
Tsu02g05198 396 SUPERFAMILY Protein kinase-like (PK-like) 75 383 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g05198 Tsu-Chr2 60940712 60944340 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g05198 75 379 Glycoside Hydrolase AT3G07070 47.557 5.43e-95 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Tsu02g05198 PK_Tyr_Ser-Thr 9.5e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g05198 - - gmx:100788856 537.339
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g05198 02 60940712 60944340 Tsu02g05198 02 60940712 60944340 ECH
Tsu02g05198 02 60940712 60944340 Tsu02g02098 02 20574888 20580815 PCT