Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g05188 ATGAAGCTTTTGAACAACAACCATTCACTCATCATGGAACATCAATCTTCACCTGCTATTATTAACAACCCTAATAATATACTTCATCTTGCTGTTGGTAAATCCCCTCACAAAACCACTACCTTACTTCAATGGACTTTCAATCACTTTCAAAACCAACAAGAAATTGTCTTGATTCATCTTTATCAACCTTCTCCTGTTATACCCACTTTAtTGGGGAAAATGCCAGCTTCTCAGGCTAATCCTGAAGTGGTATCTGCTTTTAGAAGACATGAAAGAGAACAGACTGTCAAGTTTACTGATAAGTATTTGAGCATTTGCTATGCAGCTAAGGTGAAGGCAAGCGTTATTGTAGCGGAAACTGATCAAATCCAAAAAGgaattgttgatttaattgtgAGTCATAATATTAGGAAGCTTGTCATTGGAGCGGAAACGGAAAATTTCATGAAAGCAAAAAGGAGTTCCGGGAAAGCAAATTACACTTTCAAACATGCTCCTCCGTTCTGTGAAATATGGTTTATATATAAAGGAAGACACATTTGGACAAGAGAGGCTTCTGAAATACCGTGTTCTTTGTCTTCACCTGCTCAACCTGAGATTGAAACCACAGAAAGCTTGAGATGTAGATCTTTTCAATATGGTGAGAACGAATTACCCAATTTGGAATATCTTCAACCAAATTCTGCTAGTACTGAAAGGTCATGGAAGAAAGAATTAACAATCAACTTATTGAAACCAAAAGAGAAGCTGAGANCAGCAACAGATGAGTCATTTGCAGAACTAATAAAGTGCAGGAAGTCGGAAGCCGAAGCCGCAGAAGCCATACAGAAAGTCAAATTGTTTGAATCTGCCCATGCACATGAGGTGGAGCTCAGGAAAGAGGCTGAGGTTGCAGTTAGTGATACCATACTAGAACAACAAAAGCTTTTAGAAGAGAGTGAAACTATTTCGGGAGAGCTACAAATGACCATGAGAAATGTGGCCCTGCTAGATAGCCGTGCTAAGGAAACAATCCGTAGGCGAGATGAAGCTGCACACGAGCTCTTGCTAATTCAAACATCCATATCAACCTTGTGGCAAGAAAGGCAGCAGATCAGGAGACAGAAAATGGAAACCCTCCGCTGGCTTGAACGGTGGAAAAGTCGTGGACAAGTCGGAGCAGCTCATTACAACGGGATCATTGGGTTTGCTGAAGAACTGCCTGAGTTAGCTGAATTCTCTTTATCAGATATTGAAAATGCTACATGTAATTTTTCCATGAGCTTTAAAATCGCGCAAGGTGGATTTGGTTGTATATATAAGGGGGAGATGTTAGGTAGAACTGTTGCTATAAAGAAGTTCCATCAACAAAATGTGCAAGGACCAGCAGAGTTTCATCGAGACGTTCAAATTCTTAGTAGTCTCCAACATCCTCATTTATTGACTTTGCTTGGTGTTTGCCCTGAAGCCTGGTCAATTGTATACGAGTACCTCCCGAATGGAACTCTTCAAAACTACCTATTCCGAAAAAGTAACATTATCCCTTTGACATGGAATATCAGAACACGGATGATTGCCGAAATTTCCAGTGCACTTTGTTTCTTACATTCTTTTAAACCAGAAGCTATTATTCATGGTGATCTTAAGCCCGAGACTATACTTCTTGATTCATCACTTAGTTGCAAGATATGTGAATTCAGATTCAGTAGGCTTGGGACAGAGGAGTCTCTCTATAGTCCTAGTAGTAGTTTCCACATGAGCACTGAGCCAAAGGGTGCTTTCACATATACAGATCCCGAGTTTCAGCGAACTGGGGTACTAACAACCAGCTCTGACATCTACTCCTTTGGGCTTATTATTTTGCAACTCCTCACTGGTAGGACTCCAGTTGGATTAGCAGTTCTAGTTCGCCATGCAGTTTCATGTGGAAAATTGTCATCAATTCTCGATTCTTCAGCTGGAGAATGGCCTTTATCTGTAGCATCACGGTTGGTTGAACTGGGTTTGCAATGTTGCGCACAAAATCGTAGAAGCAGACCAGATTTAACACCTACTCTCGTGAGAGAATTGGAACAGTTACATGTTTCAGAAGAGAGACCCGTGCCATCTTTTTTCTTATGTCCAATCCTTCAAGAAATAATGCATGATCCTCAAATCGCNAGCAGATGGATTTACATATGA 2163 0.4022 MKLLNNNHSLIMEHQSSPAIINNPNNILHLAVGKSPHKTTTLLQWTFNHFQNQQEIVLIHLYQPSPVIPTLLGKMPASQANPEVVSAFRRHEREQTVKFTDKYLSICYAAKVKASVIVAETDQIQKGIVDLIVSHNIRKLVIGAETENFMKAKRSSGKANYTFKHAPPFCEIWFIYKGRHIWTREASEIPCSLSSPAQPEIETTESLRCRSFQYGENELPNLEYLQPNSASTERSWKKELTINLLKPKEKLRXATDESFAELIKCRKSEAEAAEAIQKVKLFESAHAHEVELRKEAEVAVSDTILEQQKLLEESETISGELQMTMRNVALLDSRAKETIRRRDEAAHELLLIQTSISTLWQERQQIRRQKMETLRWLERWKSRGQVGAAHYNGIIGFAEELPELAEFSLSDIENATCNFSMSFKIAQGGFGCIYKGEMLGRTVAIKKFHQQNVQGPAEFHRDVQILSSLQHPHLLTLLGVCPEAWSIVYEYLPNGTLQNYLFRKSNIIPLTWNIRTRMIAEISSALCFLHSFKPEAIIHGDLKPETILLDSSLSCKICEFRFSRLGTEESLYSPSSSFHMSTEPKGAFTYTDPEFQRTGVLTTSSDIYSFGLIILQLLTGRTPVGLAVLVRHAVSCGKLSSILDSSAGEWPLSVASRLVELGLQCCAQNRRSRPDLTPTLVRELEQLHVSEERPVPSFFLCPILQEIMHDPQIXSRWIYI 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g05188 720 ProSiteProfiles U-box domain profile. 694 720 IPR003613 GO:0004842|GO:0016567
Tsu02g05188 720 Gene3D Transferase(Phosphotransferase) domain 1 492 691 - -
Tsu02g05188 720 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 692 718 IPR013083 -
Tsu02g05188 720 Gene3D Phosphorylase Kinase; domain 1 396 491 - -
Tsu02g05188 720 PANTHER OS02G0152300 PROTEIN 238 713 - -
Tsu02g05188 720 PANTHER OS02G0152300 PROTEIN 20 235 - -
Tsu02g05188 720 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 42 167 - -
Tsu02g05188 720 PANTHER OS10G0100500 PROTEIN 20 235 - -
Tsu02g05188 720 PANTHER OS10G0100500 PROTEIN 238 713 - -
Tsu02g05188 720 ProSiteProfiles Protein kinase domain profile. 419 687 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g05188 720 CDD STK_N 29 178 - -
Tsu02g05188 720 Pfam Protein tyrosine and serine/threonine kinase 423 677 IPR001245 GO:0004672|GO:0006468
Tsu02g05188 720 SUPERFAMILY Protein kinase-like (PK-like) 403 682 IPR011009 -
Tsu02g05188 720 Gene3D HUPs 20 167 IPR014729 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g05188 Tsu-Chr2 60892133 60895620 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g05188 28 715 U-box Gene Family AT2G45910 33.641 7.63e-133 411
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Tsu02g05188 PK_Tyr_Ser-Thr 3.9e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g05188 - - gmx:100788846 1035.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g05188 02 60892133 60895620 Tsu02g05188 02 60892133 60895620 ECH