Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g05170 ATGTCTCAAAGAATCGGAACTAAGCTATTTGTCAGCAGGTTATCGTTTCACACTACAAAACAAAGGTTCGAATCCTTGTTCTCACCATTCGGAGAAATTACAGAAGCTTCGCTTATAATAGACCCAAAAACTCAAAGGCCTAaaggttttggttttgtttcttACAAATCTGAAATTCAAGCTCAAAAAGCTATCAAAGCATTGAATGCAACGATAGTTGATGGAAGGATTATTTTTGTTGAACCTGCAAAACCAAAGGACTCGTGA 267 0.3446 MSQRIGTKLFVSRLSFHTTKQRFESLFSPFGEITEASLIIDPKTQRPKGFGFVSYKSEIQAQKAIKALNATIVDGRIIFVEPAKPKDS 88
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g05170 88 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 6 81 - -
Tsu02g05170 88 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 77 IPR000504 GO:0003723
Tsu02g05170 88 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN 6 81 - -
Tsu02g05170 88 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
Tsu02g05170 88 SMART rrm1_1 8 81 IPR000504 GO:0003723
Tsu02g05170 88 Gene3D - 2 88 IPR012677 -
Tsu02g05170 88 SUPERFAMILY RNA-binding domain, RBD 6 87 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g05170 Tsu-Chr2 60702324 60704048 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g05170 11 86 Eukaryotic Initiation Factors Gene Family AT5G06000 43.421 6.17e-12 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g05170 K13195 - gmx:100781760 122.094
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g05170 02 60702324 60704048 Tsu02g05170 02 60702324 60704048 ECH