Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g05158 ATGGCTCCACCTAAAGGTGATGTTTCAAAGAAGGCCGATCCAAAGGCACAGGCCTTGAAAGCTGCTAAGGCAGTGAAGTCGGGCACTGCCATTAAGAAGAAGGCAAAGAAGATCAGGACAACTGTTACATTCCATAGGCCAAAGACTTTGTCAAAGGAGAGGAACCCCAAATACCCTCGCATCAGTGCTACACCAAGGAACAAGCTTGATCATTATCAGATTCTCAAATATCCTCTCACCACTGAGTCTGCAATGAAGAAGATTGAAGATAACAACACTTTGGTTTTCATTGTTGACTTGAGAGCTGACAAAAAGAAGATCAAGGATGCAGTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAGGCCCGATGGCACCAAGAAGGCCTATGTAAGGTTGACACCTGATTATGATGCTTTGGATGTAGCAAACAAGATTGGAATTATTTAA 465 0.428 MAPPKGDVSKKADPKAQALKAAKAVKSGTAIKKKAKKIRTTVTFHRPKTLSKERNPKYPRISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g05158 154 MobiDBLite consensus disorder prediction 1 24 - -
Tsu02g05158 154 Hamap 50S ribosomal protein L23 [rplW]. 74 154 IPR013025 GO:0003735|GO:0005840|GO:0006412
Tsu02g05158 154 Pfam Ribosomal protein L23 74 136 IPR013025 GO:0003735|GO:0005840|GO:0006412
Tsu02g05158 154 Pfam Ribosomal protein L23, N-terminal domain 15 63 IPR005633 -
Tsu02g05158 154 Gene3D - 35 154 IPR012677 -
Tsu02g05158 154 PANTHER 60S RIBOSOMAL PROTEIN L23A 1 154 IPR013025 GO:0003735|GO:0005840|GO:0006412
Tsu02g05158 154 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 71 147 IPR012678 GO:0003735|GO:0005840|GO:0006412
Tsu02g05158 154 ProSitePatterns Ribosomal protein L23 signature. 132 147 IPR001014 -
Tsu02g05158 154 TIGRFAM uL23_arch: ribosomal protein uL23 78 154 IPR019985 GO:0003735|GO:0005840|GO:0006412
Tsu02g05158 154 PANTHER 60S RIBOSOMAL PROTEIN L23A-2 1 154 - -
Tsu02g05158 154 MobiDBLite consensus disorder prediction 44 63 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g05158 Tsu-Chr2 60622765 60624827 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g05158 1 154 Cytoplasmic Ribosomal Protein Gene Family AT2G39460 88.961 3.22e-70 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g05158 K02893 - jre:109003029 254.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g05158 02 60622765 60624827 Tsu02g05158 02 60622765 60624827 ECH
Tsu02g05158 02 60622765 60624827 Tsu02g02037 02 19843111 19844776 ECH
Tsu02g05158 02 60622765 60624827 Tsu02g02037 02 19843111 19844776 PCT