Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g05144 ATGGccgacaacaacaacaacaacaaatgtTTACCTTGTGACTTGCGTAACAGGAGATGTCTTGCCAACTGTCCCACGTGGGTTCACTTCCGAGATGAACAGGATTATCTGAGAGTTTTGGAGGTGTTTTCGTACAATAAGATGCGGCTTTGGATGGTGGAAGCACGTGACACCGATGCCACCGCTAGAGGCTCAGCTGCTCTGATCTGGGAGGCCGCTGCGACCACATCGGAGCAACTCCAAGCTGATGTTGCAGCTCTGAACGGGGAAATCCTTCAACTCAATGCTGATGTTGCTGCTCGCAATGCTGAAATCCAGCAACTCAACCTTAATGCTGCAGCTATGAACGCCCTTATCGTTCAACTCAATGCTGACATTGCATTCTTAAACAATCACCTTCCATCTCAATCTTCTTCTCACACAgaatttttgttgatttttctcAAGAATCAAGATGTCTGGACGTGGAAAAGGCGTTTAGCTCGTAGAGGTGGAGTGAAACGTATAAGCGGTTTAATCTATGAAGAAACTCGTGGTGTTCTTAAGATCTTTTTGGAGAATGTGATTCGTGATGCTGTTACTTATACTGAACATGCTAGGAGAAAGACTGTTACTGCTATGGATGTTGTTTATGCTTTGAAGAGACAAGGAAGGACTCTTTATGGATTTGGGGGTTAG 678 0.4248 MADNNNNNKCLPCDLRNRRCLANCPTWVHFRDEQDYLRVLEVFSYNKMRLWMVEARDTDATARGSAALIWEAAATTSEQLQADVAALNGEILQLNADVAARNAEIQQLNLNAAAMNALIVQLNADIAFLNNHLPSQSSSHTEFLLIFLKNQDVWTWKRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g05144 225 PRINTS Histone H4 signature 211 222 IPR001951 GO:0003677|GO:0030527
Tsu02g05144 225 PRINTS Histone H4 signature 184 198 IPR001951 GO:0003677|GO:0030527
Tsu02g05144 225 PRINTS Histone H4 signature 162 182 IPR001951 GO:0003677|GO:0030527
Tsu02g05144 225 PRINTS Histone H4 signature 199 211 IPR001951 GO:0003677|GO:0030527
Tsu02g05144 225 PANTHER HISTONE H4 157 225 - -
Tsu02g05144 225 Gene3D Histone, subunit A 157 225 IPR009072 GO:0046982
Tsu02g05144 225 PANTHER HISTONE H4 157 225 - -
Tsu02g05144 225 CDD H4 158 223 IPR001951 GO:0003677|GO:0030527
Tsu02g05144 225 SUPERFAMILY Histone-fold 158 222 IPR009072 GO:0046982
Tsu02g05144 225 SMART h44 151 212 IPR001951 GO:0003677|GO:0030527
Tsu02g05144 225 Pfam Centromere kinetochore component CENP-T histone fold 178 218 IPR035425 -
Tsu02g05144 225 Coils Coil 77 125 - -
Tsu02g05144 225 Pfam Lateral organ boundaries (LOB) domain 9 107 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g05144 Tsu-Chr2 60508060 60513708 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Tsu02g05144 LOB 3.1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g05144 K11254 - gmx:100778317 135.961