Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g05142 ATGAATGCACACTCCAATTCCAACAATATTATTCCATTCTCAACACCCTTTTTTCTTCCCTCTCCTTCTCCACTTATTGTGCAACAAGACCACTCCATCCTCGAATTCGACTCGCTCCACGACACTCTATCGCAACTTAACAACTCTGAATTGAGCAGTGGTTATAGCAGCTATGGTGGATCACCTTCACCAGATACTCCCATCAGCTTGATGCAGAGAAGTATTAGCAGCCATTCCCTTCACCACAATAATGGGACTAACGGCCATCATCCCTTTTCTGCTTTTTTTGCTGAGTTGCTCGAATCGGAAGATACTCCGGTGAGGAAAGTTTGCAGTACTGGCGACTTGCAGAGGATTAATGGAATGcaacataatcatcatcatcatgtggATAGTCCATTGTCTAGTGAAAGTAGTATGATCATAGAAGGTATGAGCAGAGTTTGTCCATATAGCccagaagaaaagaaagtcagaATTGAGAGATACAGAACAAAGAGGAACCAGAGGAACTTCAACAAGAAAATTaagTATGTTTGCAGGAAGACATTGGCAGATAGGAGACCACGAATTAGAGGACGGTTTGCAAGGAATGATGAAATTGATAAGAGTGCTAAAGTTGAGTGGAGCCACATTGGTGGCGgagaggaagaggatgaagaagatgagaatTGGATCAATATCTTTGATTCCATAGTTGCTGCAAATCTTGttcatgatgagtttgaagGCAGTTCTTCCTTTGGTCTATTGTATTAG 759 0.3702 MNAHSNSNNIIPFSTPFFLPSPSPLIVQQDHSILEFDSLHDTLSQLNNSELSSGYSSYGGSPSPDTPISLMQRSISSHSLHHNNGTNGHHPFSAFFAELLESEDTPVRKVCSTGDLQRINGMQHNHHHHVDSPLSSESSMIIEGMSRVCPYSPEEKKVRIERYRTKRNQRNFNKKIKYVCRKTLADRRPRIRGRFARNDEIDKSAKVEWSHIGGGEEEDEEDENWINIFDSIVAANLVHDEFEGSSSFGLLY 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g05142 252 ProSiteProfiles CCT domain profile. 156 198 IPR010402 GO:0005515
Tsu02g05142 252 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 3 252 IPR045281 GO:0009909
Tsu02g05142 252 Pfam CCT motif 158 198 IPR010402 GO:0005515
Tsu02g05142 252 PANTHER CCT MOTIF PROTEIN 3 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g05142 Tsu-Chr2 60492737 60495282 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g05142 152 212 C2C2-CO-like Transcription Factor Family AT5G15850 42.623 2.39e-12 63.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Tsu02g05142 CCT 2.9e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g05142 - - gmx:100820236 291.582
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g05142 02 60492737 60495282 Tsu02g05142 02 60492737 60495282 ECH
Tsu02g05142 02 60492737 60495282 Tsu02g03502 02 39212547 39216974 PCT