Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g05138 ATGGTTTTCATATCCAAtgtgttttgtttgtgttgtgaCAGAATGTTGGTGGAGGTAAACAAACATACAGAGGGGTCCAAAGAGAAGAAGCTACGTCCAAATGGGTTGCCTGAATCCTTGATTCGATATGATGCTCGTCAGAAAGAGAAGGCTACATCTTCTGTATCTGAGTTACTACATGCCATGAAACGTCCTCGTGCATTAAGCGAATCCGGAAACCGTCCCTTTATCAGAAAATCAGGTGGAGGttctgaagaagatgaagaagcagACAAAGTAGAACGCAAATCAAGGAGAAATTCTGATAGTGTAGCTTCTTTTAGACTAAAATCACAAAGAAAAAGTAGAAGTTCAATGGAACGAATCAGTGAGCTACCTGAAAATCAACACAAAAACTCTCATCACCATTCTTTCATGGGGTTCACGAGGAAAAGTCAGTCCATCGATGAAAACATCGATGGTGAAGAAATTGTATATGAAAGCTCTGGGAGTGACGATGATGAGGGGACTGatagttttgaatttgatgacAAAGAAAAGCTGAGGGAAAAGCGAAAAGGTCTTGATCTTGCTACTACACTTGAACGTATTGAGAAAAACTTTGTCATTACTGATCCAAGGCTTCCTGATAATCCTATAATCTTTGCATCTGATAGCTTCTTAGAGCTTACAGAATATAGTCGCGAAGAAATCTTGGGAAGAAATTGCAGGTTTCTGCAAGGACCAGAAACTGATCCAGAAACTgtgaaaaaaattagagaagCAATTGACAATCAAACAGAAGTTACCGTGCAACTGATCAATTACACAAGGACTGGGAAAAAGTTCTGGAACTTGTTTCATTTGCAACCTATGCGTGATCATAAGggagaagtgcaatATTTTATTGGTGTTCAACTTGATGGTAGTCAACATGTAGAGCCTCTTCACAATTGCATTCAAGAAGATACTGCAAAGGAGGGAGAACAATTGGTTAAAAAAACAGCAGAAAATGTTGGTGAGGCAGTGAGAGAGCTTCCAGATGCTAATCAGAAACCAGATGATTTATGGATGAATCATTCAAAAGTGGTTCACCCCAAACCTCATAGGAAGGATGATGTTCCTTGGAAAGCAATCCAAAAGATTACAGAAAATGGAGAACAAATAGGCCTAAAGCACTTTAGGCCAATTAAACCTTTGGGATCTGGAGATACCGGAAgTGTGCATCTGGTGGAGCTAGAGGGAACTGGTCAGTACTTTGCCATGAAAGCTATGGACAAGGGTGTTATGCTCAATCGCAATAAGGTCCATAGAGCTTGCACTGAAAGAGAAATTCTTGACATGTTGGACCACCCTTTTCTACCTGCATTATATGCTTCCTTTCAGACCAAAACACATGTTTGTTTGATAACCGATTACTATCCTGGTGGAGAACTATTCCTGCTTCTTGATCAACAACCAACAAAGGTTCTCAAGGAAGATGCTGTTAGATTTTATTCTGCTGAAGTACTAATTGCATTGGAGTACCTTCATTGTCAAGGCATAATTTATCGGGATTTGAAGCCAGAAAACGTGTTGATCCAAAGCAACGGGCATGTGTCTCTAACAGATTTTGATTTGTCATGTTTAACATCTTGCAAGCCACAGCTTATTCTTCCAAACACTACagaagaaaagaagaggaagaaaaagaagaagaagaagggacAACCAAAAAGTCAACAGGTTCTTATGTTTATAGCGGAACCAATGAGAGCGTCTAATTCCTTTGTTGGCACGGAAGAGTACATAGCTCCGGAAATTATAACTGGTTCAGGTCATACTAGTGCAGTAGATTGGTGGGCTCTAGGTATTCTTCTATATGAAATGCTTTATGGATATACACCATTTAGGGGAAAGACAAGACAAAAGACATTTGCAAATATTCTTCATAAAGATCTTAAATTTCCCAAAAGCAAACCGGTAAGTCCCCAGGCAAGGCAACTAATTTACCAGTTGTTGCATAGAGATCCCAAAAATAGATTGGGTTCACTTGAAGGAGCAAATGAAATTAAGAGTCATCCATTCTTCAAAAATGTCAATTGGGCTCTAATTCGTTGCATGAAACCTCCTGAGCTTGATGCTCCTATCTTACtggaaaatggtgaaaatagagAAGCCAAAAATATTGACCCCGGCCTAGatgatttacaaaaaaatattttttag 2187 0.3653 MVFISNVFCLCCDRMLVEVNKHTEGSKEKKLRPNGLPESLIRYDARQKEKATSSVSELLHAMKRPRALSESGNRPFIRKSGGGSEEDEEADKVERKSRRNSDSVASFRLKSQRKSRSSMERISELPENQHKNSHHHSFMGFTRKSQSIDENIDGEEIVYESSGSDDDEGTDSFEFDDKEKLREKRKGLDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDPETVKKIREAIDNQTEVTVQLINYTRTGKKFWNLFHLQPMRDHKGEVQYFIGVQLDGSQHVEPLHNCIQEDTAKEGEQLVKKTAENVGEAVRELPDANQKPDDLWMNHSKVVHPKPHRKDDVPWKAIQKITENGEQIGLKHFRPIKPLGSGDTGSVHLVELEGTGQYFAMKAMDKGVMLNRNKVHRACTEREILDMLDHPFLPALYASFQTKTHVCLITDYYPGGELFLLLDQQPTKVLKEDAVRFYSAEVLIALEYLHCQGIIYRDLKPENVLIQSNGHVSLTDFDLSCLTSCKPQLILPNTTEEKKRKKKKKKKGQPKSQQVLMFIAEPMRASNSFVGTEEYIAPEIITGSGHTSAVDWWALGILLYEMLYGYTPFRGKTRQKTFANILHKDLKFPKSKPVSPQARQLIYQLLHRDPKNRLGSLEGANEIKSHPFFKNVNWALIRCMKPPELDAPILLENGENREAKNIDPGLDDLQKNIF 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g05138 728 ProSiteProfiles PAS repeat profile. 186 259 IPR000014 -
Tsu02g05138 728 CDD PAS 201 301 IPR000014 -
Tsu02g05138 728 ProSitePatterns Protein kinases ATP-binding region signature. 393 416 IPR017441 GO:0005524
Tsu02g05138 728 MobiDBLite consensus disorder prediction 113 134 - -
Tsu02g05138 728 PANTHER PHOTOTROPIN-1 15 728 - -
Tsu02g05138 728 SMART pac_2 263 305 IPR001610 -
Tsu02g05138 728 Gene3D PAS domain 175 339 - -
Tsu02g05138 728 SMART serkin_6 387 683 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g05138 728 PANTHER FLIPPASE KINASE 1-RELATED 15 728 - -
Tsu02g05138 728 ProSiteProfiles PAC domain profile. 260 314 IPR000700 -
Tsu02g05138 728 Pfam PAS domain 209 301 IPR000014 -
Tsu02g05138 728 ProSitePatterns Serine/Threonine protein kinases active-site signature. 508 520 IPR008271 GO:0004672|GO:0006468
Tsu02g05138 728 Pfam Protein kinase domain 389 683 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g05138 728 MobiDBLite consensus disorder prediction 80 103 - -
Tsu02g05138 728 SUPERFAMILY PYP-like sensor domain (PAS domain) 202 301 IPR035965 -
Tsu02g05138 728 TIGRFAM sensory_box: PAS domain S-box protein 211 301 IPR000014 -
Tsu02g05138 728 Gene3D Phosphorylase Kinase; domain 1 386 470 - -
Tsu02g05138 728 ProSiteProfiles Protein kinase domain profile. 387 683 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g05138 728 CDD STKc_phototropin_like 385 702 - -
Tsu02g05138 728 MobiDBLite consensus disorder prediction 62 150 - -
Tsu02g05138 728 SUPERFAMILY Protein kinase-like (PK-like) 366 700 IPR011009 -
Tsu02g05138 728 Gene3D Transferase(Phosphotransferase) domain 1 471 695 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g05138 Tsu-Chr2 60429191 60441219 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g05138 15 728 AGC Kinase Gene Family AT3G45780 72.740 0.0 1033
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Tsu02g05138 Pkinase 1e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g05138 K20715 - gmx:100817565 1169.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g05138 02 60429191 60441219 Tsu02g05138 02 60429191 60441219 ECH
Tsu02g05138 02 60429191 60441219 Tsu02g03506 02 39301886 39313143 PCT